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ProteomicsShotgun proteomics of nucleoids from irradiated Deinococcus cells
Nucleoids have been purified from Deinococcus deserti and Deinococcus radiodurans cells subjected to irradiation and short recovery (six replicates for each strain). The nucleoids have been analyzed by shotgun proteomics as described in Toueille M et al (2012) J Proteomics. Comparative proteomics po...
ORGANISM(S): Deinococcus radiodurans Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) 
2014-01-31 | PXD000196 | Pride
Nucleoids Dna repair Deinococcus deserti Deinococcus radiodurans 
UnknownStructural insights into a new homodimeric self-activated GTPase family.
Not available
S-EPMC2002535 | biostudies-literature
ProteomicsFalcon plasma proteomics to improve avian aspergillosis diagnostic.
Comparative proteomics of plasma samples from falcon: 15 healthy birds and 15 birds with aspergillosis.
ORGANISM(S): Falco peregrinus 
2026-07-11 | PXD069478 | Pride
Falcon Proteomics Plasma 
UnknownBiosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.
Not available
S-EPMC4481705 | biostudies-literature
ProteomicsBacillus cereus proteomics - Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579
This project contributes to the proteomic comparison of Bacillus cereus wild-type and Bacillus cereus mutant devoided of the Rex regulator. Aerobiosis and anaerobiosis conditions were assayed.
ORGANISM(S): Bacillus cereus (strain ATCC 14579 / DSM 31) 
2016-07-09 | PXD000856 | Pride
Rex regulator Bacillus Cereus 
ProteomicsProteome analysis of Bacillus cereus ATCC 14579 and its tspO mutant at late exponential and stationary phases
The proteomes of Bacillus cereus ATCC 14579 and its tspO mutant were established by label-free shotgun proteomics for cells harvested at late exponential and stationary phases. The comparative analysis indicated the molecular modifications induced by the phase transition and by the mutation of the g...
ORGANISM(S): Bacillus cereus (strain ATCC 14579 / DSM 31) 
2025-03-25 | PXD055392 | Pride
Metabolism Bacillus Virulence Proteomics Pathogen Virulence factors Quorum sensing 
ProteomicsAnalysis of the exoproteomes of Bacillus cereus ATCC 14579 and its tspO mutant at late exponential and stationary phases
The exoproteomes of Bacillus cereus ATCC 14579 and its tspO mutant were established by label-free shotgun proteomics for cells harvested at late exponential and stationary phases. The comparative analysis indicated the molecular modifications induced by the phase transition and by the mutation of th...
ORGANISM(S): Bacillus cereus (strain ATCC 14579 / DSM 31) 
2025-03-25 | PXD055393 | Pride
Metabolism Bacillus Virulence Proteomics Exoproteome Pathogen Virulence factors Quorum sensing 
ProteomicsBenchmarking plasma proteomics depletion and enrichment workflows prior to LC-MS/MS analysis
A plasma sample was prepared using multiple depletion and enrichment techniques in order to improve the depth of proteomics analyses.
ORGANISM(S): Homo sapiens (Human) 
2026-06-15 | PXD069187 | Pride
Astral Proteomics Depletion Plasma Enrichment 
ProteomicsLineageFilter: Estimating the taxonomic composition of complex samples using metaproteomics and machine learning
In this study we developped LineageFilter, a new method for refined proteotyping of complex samples using metaproteomics raw data and machine learning. Given a tentative list of taxa, their abundance, and the scores associated to their identified peptides, LineageFilter computes a comprehensive set ...
ORGANISM(S): Salmonella enterica Acinetobacter baumannii Cellulomonas hominis Candida albicans (Yeast) Listeria monocytogenes Thomasclavelia ramosa Enterococcus faecalis (Streptococcus faecalis) Clostridium butyricum Blautia producta Bacillus subtilis Viruses Lactobacillus plantarum Anaerostipes caccae Enterococcus faecium Bacteroides thetaiotaomicron Limosilactobacillus fermentum Cryptococcus neoformans Eukaryota (eucaryotes) Pseudomonas aeruginosa Bacteria Klebsiella pneumoniae Streptoccous pyogenes Escherichia coli Saccharomyces cerevisiae (Baker's yeast) Bifidobacterium longum Staphylococcus aureus 
2024-11-06 | PXD049349 | Pride
Proteomics Bioinformatics 
ProteomicsBacillus cereus growth in aerobiosis condition
Proteome profiles of Bacillus cereus at early, middle, and late exponential growth phases established by high-resolution tandem mass spectrometry
ORGANISM(S): Bacillus cereus (strain ATCC 14579 / DSM 31) 
2022-02-17 | PXD025504 | Pride
Bacillus Growth Cysteines Proteomics Reactive oxygen species Bacteria Aerobiosis Redox state Redox-sensitive proteins 
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