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Unknown
(896)
Transcriptomics
(414)
Proteomics
(62)
Metabolomics
(61)
Genomics
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Models
(4)
Other
(1)
Multiomics
(1)
Organisms
Homo sapiens
(164)
Mus musculus
(86)
Saccharomyces cerevisiae
(15)
Bos taurus
(10)
Arabidopsis thaliana
(10)
Rattus norvegicus
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Oncorhynchus nerka
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Drosophila melanogaster
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Plasmodium falciparum
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Gallus gallus
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Rhodopirellula baltica
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Triticum aestivum
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Ralstonia solanacearum
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Oncorhynchus mykiss
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Ovis aries
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Caenorhabditis elegans
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Sinorhizobium meliloti
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Yersinia pseudotuberculosis YPIII
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Macaca mulatta
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Trypanosoma cruzi
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Plasmodium falciparum NF54
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Mycobacterium tuberculosis H37Rv
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Organisms
Homo sapiens
(7)
Mus musculus
(3)
Helianthus annuus subsp. annuus
(2)
Oncorhynchus mykiss
(2)
Drosophila melanogaster
(1)
Equus caballus
(1)
Oryza sativa
(1)
Sus scrofa
(1)
Arabidopsis thaliana
(1)
Repository
biostudies-arrayexpress
(417)
MetaboLights
(61)
pride
(53)
ENA
(32)
geo
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MassIVE
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Normal
(7)
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(2)
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(1)
Xenografts with H1299 cell line
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Infected
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(1)
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(1)
Idiopathic dilated cardiomyopathy
(1)
Neurofibromatosis type 1
(1)
Cartilage-hair hypoplasia
(1)
Hepatitis C
(1)
Infertility
(1)
Metabolic dysfunction-associated steatotic liver disease
(1)
Myelodysplastic syndrome
(1)
Myeloid leukemia
(1)
Neurodegenerative disease
(1)
Pertussis
(1)
Technology Type
Mass Spectrometry
(53)
Mass spectrometry
(52)
Shotgun proteomics
(24)
Bottom-up proteomics
(13)
NMR spectroscopy
(7)
Data-independent acquisition
(7)
Data-dependent acquisition
(6)
Gel-based experiment
(5)
Affinity purification coupled with mass spectrometry proteomics
(3)
Chemical cross-linking coupled with mass spectrometry proteomics
(3)
SWATH MS
(3)
NMR spectroscopy assay
(2)
Mass spectrometry assay
(2)
HDMSE
(2)
Immunopeptidomics
(1)
MSE
(1)
Proteogenomics
(1)
SRM/MRM
(1)
Top-down proteomics
(1)
Instrument Platform
Illumina NovaSeq 6000
(18)
Illumina HiSeq 2000
(11)
NextSeq 500
(9)
Illumina HiSeq 2500
(7)
ScanArray 5000 [PerkinElmer]
(5)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel).
(2)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB
(2)
Illumina Genome Analyzer IIx
(2)
Generation III Scanner
(2)
ScanArray Express HT [PerkinElmer]
(2)
Axon GenePix 4000B scanning hardware
(2)
Illumina NovaSeq X
(2)
Microsyringe for intraperitoneal injection
(1)
Computational server/cluster, Software: R (v4.3.x), Seurat package (v5.1.0)
(1)
Biological safety cabinet, Centrifuge, Cell strainer, Automated cell counter/Hemocytometer
(1)
Surgical dissection tools
(1)
Illumina NovaSeq 6000 sequencing platform (Illumina)
(1)
FastPrep‑24 homogenizer (MP Biomedicals)
(1)
BD Rhapsody system
(1)
See manuscript
(1)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds.
(1)
G2565BA DNA microarray scanner
(1)
Cell Sorter Aria III or Influx (BD biosciences)
(1)
10X Genomics Chromium
(1)
Agilent® 2100 Bioanalyzer Instrument
(1)
None
(1)
QuantStudioTM 12K Flex system
(1)
BD Influx
(1)
Agilent 2100 Bioanalyzer
(1)
ArrayWoRx Biochip Reader [Applied Precision]
(1)
Publication Date
2010
(58)
2011
(47)
2014
(46)
2012
(43)
2013
(42)
2015
(41)
2016
(34)
2024
(24)
2009
(23)
2026
(22)
2025
(22)
2022
(20)
2023
(18)
2021
(16)
2020
(15)
2008
(15)
2017
(13)
2018
(11)
2007
(10)
2006
(10)
2019
(9)
2004
(5)
2005
(3)
2003
(1)
2002
(1)
CHEBI ID
CHEBI:33113
(1)
CHEBI:16853
(1)
CHEBI:9504
(1)
CHEBI:206
(1)
CHEBI:10885
(1)
CHEBI:18564
(1)
CHEBI:57434
(1)
CHEBI:4252
(1)
CHEBI:21098
(1)
CHEBI:133520
(1)
CHEBI:59451
(1)
CHEBI:21099
(1)
CHEBI:21544
(1)
CHEBI:58493
(1)
CHEBI:40986
(1)
CHEBI:13026
(1)
CHEBI:71394
(1)
CHEBI:71393
(1)
CHEBI:12005
(1)
CHEBI:12004
(1)
CHEBI:20399
(1)
CHEBI:1859
(1)
CHEBI:40998
(1)
CHEBI:20403
(1)
CHEBI:1861
(1)
CHEBI:58574
(1)
CHEBI:57396
(1)
CHEBI:27294
(1)
CHEBI:15311
(1)
CHEBI:9991
(1)
Metabolite Name
Lysine
(15)
Phenylalanine
(15)
Proline
(14)
Glutamate
(14)
Tyrosine
(14)
Leucine
(14)
Glycine
(14)
Beta-alanine
(14)
Spermidine
(14)
Myo-inositol
(14)
Serine
(13)
Arginine
(13)
Histidine
(13)
Threonine
(13)
Methionine
(13)
Glycerophosphoglycerol
(13)
Tryptophan
(12)
Citrulline
(12)
Asparagine
(12)
Glucose
(12)
Lactate
(12)
Uracil
(12)
Phosphate
(11)
Uridine
(11)
Taurine
(11)
Nicotinamide
(11)
Guanosine
(11)
Cytidine
(11)
Carnitine
(11)
Aspartate
(11)
IsPrivate
False
(4)
Submitter Keywords
Ersilia
(1)
FAIR-AIML
(1)
Machine Learning Model
(1)
First Public Date
2025
(6)
2026
(4)
2014
(4)
2019
(3)
2017
(3)
2024
(2)
2023
(2)
2020
(2)
2016
(2)
2013
(2)
2018
(1)
2015
(1)
Modelling Approach
Other
(2)
Computational model
(1)
Ordinary differential equation model
(1)
Study type
Transcription profiling by array
(306)
RNA-seq of coding RNA
(43)
RNA-seq of coding RNA from single cells
(14)
RNA-seq of non coding RNA
(7)
Comparative genomic hybridization by array
(5)
Other
(5)
ChIP-seq
(5)
Unknown experiment type
(4)
Transcription profiling by SAGE
(3)
ChIP-chip by array
(3)
MicroRNA profiling by array
(3)
Transcription profiling by RT-PCR
(2)
Spatial transcriptomics by high-throughput sequencing
(2)
DNA-seq
(2)
RNA-seq of non coding RNA from single cells
(1)
Tiling path by array
(1)
ChIP-chip by tiling array
(1)
High-throughput sequencing
(1)
Animal - High-throughput sequencing
(1)
RNAi profiling by array
(1)
Genotyping by array
(1)
Single nucleus RNA sequencing
(1)
Methylation profiling by array
(1)
Genotyping by high throughput sequencing
(1)
Methylation profiling by high throughput sequencing
(1)
RNA-seq of total RNA
(1)
Release Date
2025
(132)
2023
(117)
2022
(110)
2024
(105)
2021
(89)
2020
(78)
2014
(70)
2010
(69)
2016
(61)
2013
(61)
2011
(59)
2015
(57)
2012
(52)
2019
(50)
2018
(46)
2017
(37)
2026
(31)
2009
(26)
2008
(17)
2007
(16)
2006
(12)
2004
(9)
2005
(5)
2003
(2)
2002
(1)
2001
(1)
Lab affiliation
National Center for Biotechnology (CNB-CSIC), Department of Macromolecular Structures)
(2)
Protim Irset Inserm U1085
(2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands, 2 Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, The Netherlands
(1)
1 Department of Computer Science, Hanyang University, Seoul 04763, Republic of Korea 2 Institute for Artificial Intelligence Research, Hanyang University, Seoul 04763, Republic of Korea
(1)
Andalusian Center for Molecular Biology and Regenerative medicine, CABIMER-US
(1)
Assistant Professor, Biochemistry And Molecular Biology, School of Medicine, Tulane University
(1)
Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University
(1)
Biozentrum, Univesity of Basel, CH-4056 Basel, Switzerland
(1)
Cell Signaling and Proteomics Group, Center for Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London, London EC1M 6BQ, UK.
(1)
Cellular Proteome Research Group, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany
(1)
Center for Ecological and Evolutionary Synthesis Department of Biosciences University of Oslo
(1)
Department of Biochemistry, Microbiology and Immunology, University of Ottawa; University of Ottawa Heart Institute
(1)
Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA; Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA
(1)
Department of Biomedical and Pharmaceutical Sciences, College of Pharmacy,University of Rhode Island, Kingston, RI, 02881,
(1)
Department of Chemical and Biological Engineering University of Sheffield Mappin Street, Sheffield S1 3JD United Kingdom
(1)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Heidelberg, Germany
(1)
Department of Internal Medicine, Gerontology and Geriatric Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157, United States
(1)
Department of Microbial Sciences School of Biosciences and Medicine University of Surrey
(1)
Department of Molecular Biology Umeå University SE-901 87 Umeå Sweden
(1)
Department of Ophthalmology, University of California, Irvine, CA 92697
(1)
Department of Pharmacology, University of Arizona College of Medicine - Tucson
(1)
Department of Pharmacy, Drug Design and Optimisation, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Saarbrücken, Germany
(1)
Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health AlbaNova University Center, KTH Royal Institute of Technology
(1)
Division of Molecular Hematology, Department of Laboratory Medicine, Lund Stem Cell Center, Faculty of Medicine, Lund University, Lund, Sweden
(1)
Hematology and Transfusion Medicine, Department of Laboratory Medicine, Lund University, Lund, Sweden
(1)
Imperial College London, UK
(1)
Intercollegiate Faculty of Biotechnology, Laboratory of Mass Spectrometry, University of Gdańsk and Medical University of Gdańsk, Gdańsk, Poland
(1)
Johns Hopkins University, Department of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA, Thomas C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA
(1)
Key Lab of Aridland Crop Science, Gansu Agricultural University, Lanzhou, Gansu, P.R. China
(1)
Tags
xref:PubMed:20433717
(1)
xref:PubMed:20484085
(1)
xref:PubMed:29047256
(1)
xref:PubMed:17519037
(1)
xref:PubMed:17962478
(1)
xref:PubMed:28740083
(1)
xref:PubMed:32345633
(1)
xref:PubMed:31221730
(1)
xref:PubMed:31142855
(1)
xref:PubMed:26801061
(1)
xref:PubMed:28790031
(1)
xref:PubMed:41577668
(1)
xref:PubMed:41179707
(1)
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Automated synthesis of backbone protected peptides.
Not available
S-EPMC4161149
|
biostudies-literature
Cite
Automated Multistep Continuous Flow Synthesis of 2-(
1H
-Indol-3-yl)thiazole Derivatives.
Not available
S-EPMC3953499
|
biostudies-literature
Cite
HPLC-Based Automated Synthesis and Purification of Carbohydrates.
Not available
S-EPMC11586687
|
biostudies-literature
Cite
Automated synthesis of prexasertib and derivatives enabled by continuous-flow solid-phase synthesis.
Not available
S-EPMC8054510
|
biostudies-literature
Cite
Automated Flow Synthesis of Tumor Neoantigen Peptides for Personalized Immunotherapy.
Not available
S-EPMC6971261
|
biostudies-literature
Cite
Enzymatic Building-Block Synthesis for Solid-Phase Automated Glycan Assembly.
Not available
S-EPMC7756758
|
biostudies-literature
Cite
Automated, Accelerated Nanoscale Synthesis of Iminopyrrolidines.
Not available
S-EPMC7383484
|
biostudies-literature
Cite
Stereoselective Synthesis of β-Branched Aromatic α-Amino Acids by Biocatalytic Dynamic Kinetic Resolution*.
Not available
S-EPMC8319157
|
biostudies-literature
Cite
Automated solid-phase synthesis of metabolically stabilized triazolo-peptidomimetics.
Not available
S-EPMC10909554
|
biostudies-literature
Cite
Automated solid-phase synthesis of oligosaccharides containing sialic acids.
Not available
S-EPMC4464161
|
biostudies-literature
Cite
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