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ProteomicsAn Integrated Systems Approach Unveils New Aspects of Microoxia-mediated Regulation in Bradyrhizobium diazoefficiens
Using an integrated systems approach, the expressed proteome of B. diazoefficiens strain 110scp4 was measured under i) normal, oxic growth, and ii) microoxic growth condtions. This included, as a first step, the sequencing and de novo assembly of the genome of this widely used rhizobial model strain...
ORGANISM(S): Bradyrhizobium diazoefficiens 
2019-05-30 | PXD012491 | Pride
Comparative genomics Microoxia Proteogenomics Shotgun proteomics Symbiosis B. diazoefficiens Genome sequencing Transcriptomics Rhizobia Fnr/crp proteins 
ProteomicsProteomic Characterization of Bradyrhizobium diazoefficiens bacteroids during soybean root nodules senescence
The form and physiology of Bradyrhizobium diazoefficiens after the decline of symbiotic nitrogen fixation has been characterized. Proteomic analyses showed that the post-symbiotic B. diazoefficiens undergo metabolic remodeling as well defined groups of proteins declined, increased or remained unchan...
ORGANISM(S): Bradyrhizobium japonicum USDA 110 
2019-11-12 | PXD011604 | Pride
Nitrogen fixation Bradyrhizobium diazoefficiens Soybean Senescence 
GenomicsBradyrhizobium diazoefficiens strain:110spc4
Bradyrhizobium diazoefficiens strain:110spc4 Genome sequencing and assembly
PRJNA493766 | ENA
GenomicsBradyrhizobium diazoefficiens
Isolation of Bradyrhizobium diazoefficiens from Root Nodules of Field-Grown Soybean Plants
PRJDB38046 | ENA
ProteomicsPleiotropic effects of PhaR regulator in Bradyrhizobium diazoefficiens microaerobic metabolism
Bradyrhizobium diazoefficiens can live inside soybean root nodules and in free-living conditions. In both states, when oxygen levels decrease, cells adjust their protein pools by gene transcription modulation. PhaR encodes a transcription factor annotated as PHA (polyhydroxyalkanoate) accumulation r...
ORGANISM(S): Bradyrhizobium japonicum USDA 110 Bacteria 
2024-05-22 | PXD047760 | Pride
Polyhydroxybutyrate Proteomics Microoxia Protein-dna interaction Rhizobia Transcriptomics 
TranscriptomicsPleiotropic effects of PhaR regulator in Bradyrhizobium diazoefficiens microaerobic metabolism
Genome-wide transcription profiling of B. diazoefficiens (formerly B. japonicum) and a phaR mutant, both cultured under microoxic conditions (0.5% O2) in Götz minimal medium supplemented with mannitol. Keywords: microoxia, polyhydroxybutyrate, protein-DNA interaction, proteomics, Rhizobia, transcrip...
ORGANISM(S): Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 110 
2024-02-28 | GSE250298 | GEO
ProteomicsPleiotropic effects of PhaR regulator in Bradyrhizobium diazoefficiens microaerobic metabolism
Identification of PHB Granule-associated Proteins in B. diazoefficiens and a phaR mutant, both cultured under microoxic conditions (0.5% O2) in Götz minimal medium supplemented with mannitol.
ORGANISM(S): Bradyrhizobium japonicum USDA 110 Bacteria 
2024-05-21 | PXD047962 | Pride
Polyhydroxybutyrate Proteomics Microoxia Protein-dna interaction Rhizobia Transcriptomics 
GenomicsBradyrhizobium diazoefficiens strain:CPAC 390
Bradyrhizobium diazoefficiens strain:CPAC 390 Genome sequencing and assembly
PRJNA787647 | ENA
GenomicsBradyrhizobium diazoefficiens strain:CPAC 392
Bradyrhizobium diazoefficiens strain:CPAC 392 Genome sequencing and assembly
PRJNA787649 | ENA
GenomicsBradyrhizobium diazoefficiens strain:CPAC 394
Bradyrhizobium diazoefficiens strain:CPAC 394 Genome sequencing and assembly
PRJNA787652 | ENA
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