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TranscriptomicsRNA sequencing of mouse embryonic day 3.5 blastocyst inner cell mass cells
Inner cell mass (ICM) cells of two independent E3.5 blastocysts were profiled by transcriptome sequencing to assess the expression of extracellular matrix components.
ORGANISM(S): Mus musculus 
2014-05-15 | E-MTAB-2555 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization by array of glioblastoma-derived neural stem cells
Comparative genomic hybridization of glioma neural stem cells and normal human reference DNA
ORGANISM(S): Homo sapiens 
2012-09-21 | E-MTAB-972 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of 7SK knockdown in mouse embryonic stem cells
Transcriptome profiling of mouse embryonic stem cells following antisense knockdown of the non-coding RNA 7SK.
ORGANISM(S): Mus musculus 
2013-09-09 | E-MTAB-1585 | biostudies-arrayexpress
TranscriptomicsDigital expression analysis of glioma neural stem cells
High-throughput sequencing of transcript tags from normal and glioblastoma-derived neural stem cell lines
ORGANISM(S): Homo sapiens 
2012-09-21 | E-MTAB-971 | biostudies-arrayexpress
TranscriptomicsRNA sequencing of marmoset embryonic development
Transcriptional profiling of common marmoset embryo stages spanning E5.0 to E7.0 was performed by RNA-seq.
ORGANISM(S): Callithrix jacchus 
2015-11-05 | E-MTAB-2959 | biostudies-arrayexpress
GenomicsChIP-seq analysis of Foxa2 binding sites in midbrain dopaminergic progenitors
Embryonic stem (ES) cells were differentiated in culture to midbrain dopaminergic (mDA) progenitors and subjected to ChIP-seq analysis to resolve genome-wide binding sites of forkhead box protein A2 (Foxa2). Foxa2 was found to directly regulate multiple lineage pathways to specify midbrain dopaminer...
ORGANISM(S): Mus musculus 
2012-07-01 | E-MTAB-1137 | biostudies-arrayexpress
TranscriptomicsRNA-seq of chemically reset human naive pluripotent stem cells
A simple method is presented to reset human pluripotent cells to a naive state via transient histone deacetylase inhibition and maintenance in chemically-defined naive stem cell culture media. Cells can be reset without transgenes and expanded continuously either on feeders or alternative substrates...
ORGANISM(S): Homo sapiens 
2017-08-07 | E-MTAB-5674 | biostudies-arrayexpress
TranscriptomicsRNA-seq of BMP response in glioblastoma-derived neural stem cells
The transcriptional response of normal and glioblastoma-derived neural (GNS) cells was profiled in self-renewing conditions and over a time course of differentiation in the presence of bone morphogenic protein (BMP).
ORGANISM(S): Homo sapiens 
2015-10-02 | E-MTAB-3867 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of PADI4 overexpression and inhibition in mouse embryonic stem cells
The enzymatic activity of PADI4 was investigated by overexpression and chemical inhibition to determine the effects of arginine citrullination on histone displacement, reprogramming efficiency and the maintenance of pluripotent stem cells.
ORGANISM(S): Mus musculus 
2013-11-22 | E-MTAB-1975 | biostudies-arrayexpress
TranscriptomicsMaskless photolithography genome tiling experiment
This experiment was designed to identify transcribed sequences across the human genome, particularly those distinct from previously annotated genes. To measure global transcriptional activity a series of high-density oligonucleotide tiling arrays was constructed to represent sense and antisense stra...
ORGANISM(S): Homo sapiens 
2004-10-29 | E-GEOD-1904 | biostudies-arrayexpress
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