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MetabolomicsHarnessing a Germ-Free Mouse Gut Bioreactor for Directed Evolution of Probiotics to Combat NAFLD

The data uploaded in this study were obtained from an interventional experiment in which non-alcoholic fatty liver disease (NAFLD) model mice were treated with either the original or adapted bacterial strains, followed by fecal sample collection and targeted bile acid metabolomic analysis.

2026-01-20 | MTBLS13718 | MetaboLights
OtherBile Acid Bioreactor Samples
Bioreactor bile acids experiment via Broad Institute (Ramnik Xavier lab)
ORGANISM(S): None 
2018-08-08 | MSV000082802 | MassIVE
Genomicsanammox bioreactor samples
Anammox bioreactor samples Raw sequence reads
PRJNA1121954 | ENA
ProteomicsMetaproteomes of a cyanobacterial consortium from a haloalkaline bioreactor over a 12 day dark incubation
A photosynthetic cyanobacterial/microbial consortium was incubated in the dark for 12 days. During the course of this dark incubation, samples were taken every two days from the biomass portion and the liquid (supernatant) portion of the bioreactor. Metaproteomics analysis was conducted on these tim...
ORGANISM(S): Oscillatoriaceae cyanobacterium 
2023-11-01 | PXD023504 | Pride
Cyanobacteria Phormidium 1d-lc Metagenomics Bioenergy Bioreactor Fermentation Phototrophic Metaproteomics Haloalkaline 
ProteomicsToward industrial C8 production: Oxygen intrusion drives renewable n caprylate production from ethanol and acetate via intermediate metabolite production
Previous bioreactor studies achieved high volumetric n caprylate (i.e., n octanoate) production rates and selectivities from ethanol and acetate with chain elongating microbiomes. However, the metabolic pathways from the substrates to n caprylate synthesis were unclear. We operated two n caprylate p...
ORGANISM(S): bioreactor metagenome 
2025-05-24 | PXD054148 | Pride
N caprylate Bioreactor Metaproteomic 
ProteomicsS-Trap eliminates Pluronic F68 and cell culture media polymers for effective proteomic analysis of mammalian cell bioreactor supernatants
Proteomic analysis of bioreactor supernatants can inform on cellular metabolic status, viability, and productivity, as well as product quality, which can in turn help optimize bioreactor operation. Incubating mammalian cells in bioreactors requires the addition of polymeric surfactants such as Pluro...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2020-06-30 | PXD017214 | Pride
Polymer contaminants Alkylation Bottom-up proteomics Mass spectrometry Sp3 Sample preparation S-trap Bioreactor samples 
MetabolomicsOn-line untargeted metabolomics monitoring of an Escherichia coli succinate fermentation process
The real-time monitoring of metabolites (RTMet) is instrumental for the industrial production of biobased fermentation products. This study shows the first application of untargeted on-line metabolomics for the monitoring of undiluted fermentation broth samples taken automatically from a 5 L bioreac...
2023-04-26 | MTBLS5197 | MetaboLights
GenomicsArchaeal community in refuse and leacahte samples from landfill bioreactor treated by antibiotics
Archaeal community in refuse and leacahte samples from landfill bioreactor treated by antibiotics Raw sequence reads
PRJNA494899 | ENA
Genomicsbioreactor metagenome
Bioreactor inoculated with sediment Metagenome
PRJNA158439 | ENA
Genomicsbioreactor sludge metagenome
bioreactor sludge metagenome Metagenome
PRJNA1221791 | ENA
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