Bmdm - OmicsDI

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Genomics (548)
Transcriptomics (408)
Unknown (349)
Proteomics (47)
Metabolomics (10)
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Models (2)
Methylation profiling (1)

Organisms

Mus musculus (432)
Schizophyllum commune H4-8 (43)
Mycobacterium tuberculosis SP7 (43)
Mycobacterium tuberculosis SP10 (43)
Mycobacterium tuberculosis SP13 (43)
Mycobacterium tuberculosis SP22 (43)
Chlamydomonas reinhardtii (43)
Enterococcus mundtii CRL35 (43)
Oncorhynchus tshawytscha (43)
Pseudomonas canadensis (43)
Influenza A virus (A/California/04/2009(H1N1)) (43)
Pseudomonas aeruginosa PAO1H2O (43)
Human alphaherpesvirus 1 strain 17 (43)
Mycobacterium tuberculosis SP1 (43)
Marchantia polymorpha subsp. ruderalis (43)
Methylocystis sp. (43)
Exiguobacterium sp. SH31 (43)
Palaemonetes sp. common grass shrimp associated circular virus (43)
Amaranthus tricolor (43)
Rattus norvegicus (6)
Sus scrofa (6)
Homo sapiens (4)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (3)
Candida albicans (2)
Leishmania mexicana (1)
Macaca mulatta (1)
Mus musculus domesticus (1)
Gallus gallus (1)
Toxoplasma gondii (1)
Mus (1)

Organisms

Mus musculus (415)
Sus scrofa (4)
Rattus norvegicus (4)
Mus musculus musculus (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
African swine fever virus (1)
Mus (1)
Macaca mulatta (1)
Candida albicans (1)
unidentified (1)
Homo sapiens (1)

Repository

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geo (325)
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pride (43)
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Tissue

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Disease

Primary immunodeficiency disease (2)
Yersinia enterocolitica WAP infected (virulent) (1)
Normal (1)
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Niemann-Pick disease (1)
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Technology Type

Mass Spectrometry (48)
Shotgun proteomics (19)
Bottom-up proteomics (13)
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ESI (5)
Mass spectrometry (4)
Data-independent acquisition (4)
Gel-based experiment (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Top-down proteomics (2)
DiaPASEF (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (6)
NextSeq 550 (4)
Illumina NovaSeq X (3)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Q Exactive (2)
Axon- GenePix4000B (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2500 (1)
Orbitrap mass spectrometer, Exploris 480, Thermo Scientific (1)
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Gas Chromatography MS - - - Liquid Chromatography MS - - - Gas Chromatography MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

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2020 (21)
2014 (19)
2012 (19)
2016 (18)
2018 (17)
2010 (16)
2017 (13)
2011 (9)
2009 (6)
2007 (4)
2008 (3)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:15978 (3)
CHEBI:16708 (3)
CHEBI:15891 (3)
CHEBI:30887 (3)
CHEBI:16737 (3)
CHEBI:30769 (3)
CHEBI:47823 (2)
CHEBI:16294 (2)
CHEBI:28997 (2)
CHEBI:42111 (2)
CHEBI:17768 (2)
CHEBI:62084 (2)
CHEBI:28931 (2)
CHEBI:16974 (2)
CHEBI:16556 (2)
CHEBI:16024 (2)
CHEBI:17992 (2)
CHEBI:16160 (2)
CHEBI:15901 (2)
CHEBI:16192 (2)
CHEBI:17009 (2)
CHEBI:18066 (2)
CHEBI:71028 (2)
CHEBI:4828 (2)
CHEBI:17713 (2)
CHEBI:17200 (2)
CHEBI:17553 (2)
CHEBI:16450 (2)
CHEBI:73074 (2)
CHEBI:27551 (2)

Metabolite Name

L-Citrulline (3)
L-Lysine (3)
L-Proline (3)
L-Asparagine (3)
L-Threonine (3)
L-Tryptophan (3)
L-Glutamate (3)
L-Serine (3)
Creatine (3)
L-Methionine (3)
L-Tyrosine (3)
L-Phenylalanine (3)
Ethanolamine phosphate (2)
N6-Methyl-L-lysine (2)
L-Aspartate (2)
N6,N6,N6-Trimethyl-L-lysine (2)
Hypotaurine (2)
N-Acetyl-D-glucosamine (2)
Stearoylcarnitine (2)
Heptadecanoic acid (2)
Beta-Alanine (2)
N-Acetylglutamine (2)
L-Alanine (2)
Uracil (2)
Betaine (2)
Thymine (2)
Glutathione (2)
Glutathione disulfide (2)
5-Methylcytosine (2)
Phosphoenolpyruvate (2)

First Public Date

2024 (82)
2025 (62)
2026 (50)
2022 (49)
2023 (46)
2021 (44)
2014 (37)
2020 (33)
2019 (32)
2018 (26)
2017 (22)
2015 (12)
2016 (9)
2013 (3)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (2)
Functional Cellular Networks Section Laboratory of Immune System Biology National Institute of Allergy and Infectious Diseases National Institutes of Health (1)
Receptor Research Laboratories, Nuclear Receptor Lab, Ghent University, Ghent, Belgium; cDepartment of Biochemistry, VIB-UGent Center for Medical Biotechnology, Ghent, Belgium; Department of Biochemistry, Ghent University, Ghent, Belgium (1)
Molecular Proteomics Laboratory (MPL) Biologisch-Medizinisches Forschungszentrum (BMFZ) University hospital Düsseldorf Heinrich-Heine-Universität Düsseldorf (1)
Department of Ecogenomics and Systems Biology, Division Molecular Systems Biology, University of Vienna, Austria (1)
Proteomics, Cell Metabolism, Agios, Cambridge, MA, USA (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dow St, Dundee, DD1 5EH, Scotland, UK (1)
JHU (1)
Metabolic Programming, TUM School of Life Sciences, Technical University of Munich, Munich, Bavaria, Germany (1)
1Department of Physiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA (1)
Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong (1)
Department of Immunology, Center for Immunotherapy, Peking Union Medical College, Chinese Academy of Medical Sciences (1)
Biotech Research & Innovation Center (BRIC), University of Copenhagen, Denmark (1)
University of Colorado Denver – Anschutz Medical Campus, Department of Biochemistry and Molecular Genetics, Aurora, CO, USA (1)
State Key Laboratory of Pharmaceutical Biotechnology, Jiangsu Key Laboratory of Molecular Medicine, Medical School of Nanjing University, Nanjing, China. (1)
Cell Signalling and Immunology, School of life Sciences, University of Dundee (1)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee (1)
Kinases and Brain Development Lab, The Francis Crick Institute, England (1)
School of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong, China (1)
Cell Signalling & Immunology, School of Life Sciences, University of Dundee (1)
Director of Proteomics Facility at IMBB (ProFI) (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 Albert.Sickmann@isas.de www.isas.de (1)
Dpt. of Immunobiology, University of Lausanne (UNIL). Ch.Boveresses 155 CH-1066 Epalinges (1)
Paul R crocker: Professor of Glycoimmunology and Head of the Division of Cell Signalling and Immunology (1)
Inflammation and Experimental Surgery Unit LAIB Building - 4th floor (lab 4.20) IMIB-Arrixaca Ctra. Buenavista s/n 30120 El Palmar (Murcia). Spain (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
The First Affiliated Hospital, School of Medicine, Zhejiang University (1)
Newcastle University Biosciences Institute, Newcastle University, Newcastle upon Tyne, NE24HH, United Kingdom (1)
Department of Physiology, Wuhan University TaiKang Medical School (School of Basic Medical Sciences), Wuhan, China. (1)
Technical University of Munich, School of Medicine, Institute of Virology, Munich, Germany (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

fungi (1)
viruses (1)
bacteria (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (88)
RNA-seq of coding RNA (17)
ChIP-seq (15)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
Animal - High-throughput sequencing (1)
ATAC-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2021 (51)
2022 (49)
2023 (43)
2025 (40)
2024 (34)
2020 (32)
2016 (29)
2013 (29)
2015 (27)
2019 (22)
2014 (21)
2018 (20)
2017 (19)
2012 (16)
2010 (15)
2011 (10)
2009 (8)
2026 (5)
2008 (4)
2007 (3)
2006 (1)

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Timecourse of C56BL6 BMDM stimulated with different TLRs (part-I)

Not available

ORGANISM(S): Mus musculus

ST001342 | MetabolomicsWorkbench

C56BL6 BMDM stimulated with different TLRs W/O acetylated LDL (part-II)

Not available

ORGANISM(S): Mus musculus

ST001341 | MetabolomicsWorkbench

C56BL6 WT or IFNARKO BMDM stimulated with different TLRs (part-V)

Not available

ORGANISM(S): Mus musculus

ST001345 | MetabolomicsWorkbench

C56BL6 WT or TRIFKO BMDM stimulated with different TLRs (part-III)

Not available

ORGANISM(S): Mus musculus

ST001343 | MetabolomicsWorkbench

C56BL6 WT or MyD88KO BMDM stimulated with different TLRs (part-IV)

Not available

ORGANISM(S): Mus musculus

ST001344 | MetabolomicsWorkbench

Downstream Molecules of YKL-40 in Regulating Apoptosis in BMDM

An iTRAQ-based proteomics analysis was performed on BMDM to screen out the potential downstream target molecules of YKL-40 in regulating macrophage apoptosis.

ORGANISM(S): Mus musculus (Mouse)

2022-02-15 | PXD028305 | Pride

WT BMDM M2 vs RON TK- BMDM M2

PRJNA701293 | ENA

Expression data from pig BMDM treated with salmonella LPS

Mouse bone marrow-derived macrophages (BMDM) grown in macrophage colony-stimulating factor (CSF-1) have been used widely in studies of macrophage biology and the response to toll-like receptor agonists. We investigated whether similar cells could be derived from the domestic pig. Cultivation of pig ...

ORGANISM(S): Sus scrofa

2011-08-31 | E-GEOD-30956 | biostudies-arrayexpress

BCG stimulated C57BL/6-derived BMDM

PRJNA587163 | ENA

Candida albicans infection suppresses Lipopolysaccharide or Pseudomonas aeruginosa stimulated murine bone marrow derived macrophage (BMDM) responses

Candida albicans is a commensal fungi which populates most healthy individuals’ microflora, but can turn opportunistic in immunocompromised individuals. This opportunistic pathogen can cause severe disease and is linked with high rates of mortality. With limited therapeutic options and increasing re...

ORGANISM(S): Candida albicans (Yeast) Mus musculus (Mouse)

2026-03-16 | PXD062689 | Pride

Proteomics Bone marrow derived macrophages Co-infection P. aeruginosa infection C. albicans infection

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1371 Results

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