Bolt - OmicsDI

Show results for

Unknown (560)
Proteomics (58)
Transcriptomics (32)
Genomics (11)
Metabolomics (7)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (58)
Andropogon gerardi (58)
Bacteria (58)
Canis lupus familiaris (58)
Cnidaria (58)
Ectopseudomonas oleovorans CECT 5344 (58)
Ensifer adhaerens (58)
Enterococcus faecalis (58)
Globicatella sanguinis (58)
Halictus scabiosae (58)
Histomonas meleagridis (58)
Human immunodeficiency virus 1 (58)
Mesocricetus auratus (58)
Methylohalobius crimeensis 10Ki (58)
Miscanthus x giganteus (58)
Mus musculus (58)
Panicum virgatum (58)
Pseudomonas aeruginosa SJTD-1 (58)
Rabies virus Nishigahara RCEH (58)
Rattus norvegicus (58)
Rattus rattus (58)
Rhodococcus jostii RHA1 (58)
Homo sapiens (10)
Sus scrofa (5)
Arabidopsis thaliana (5)
Bos indicus (3)
Bos taurus (3)
Mus musculus (3)
Ovis aries (2)
Sus scrofa domesticus (1)

Organisms

Arabidopsis thaliana (2)
Bos taurus (2)
Mus musculus (2)
Amaranthus tricolor (1)
Lactuca sativa (1)

Repository

pride (58)
biostudies-arrayexpress (30)
ENA (11)
MetaboLights (7)
geo (2)

Tissue

Cell culture (15)
Brain (6)
Liver (3)
Blood plasma (2)
Fibroblast (2)
Heart (2)
Hepatocyte (2)
Kidney (2)
Muscle (2)
Primary cell (2)
Retinal pigment epithelial cell (2)
B cell (1)
Blood cell (1)
Blood serum (1)
CD4 positive T lymphocyte (1)
Cell line cell (1)
Cell suspension culture (1)
Endothelial cell of umbilical vein (1)
Epithelial cell (1)
HeLa cell (1)
HiPSC cell (1)
Larva (1)
Leaf (1)
Lung (1)
Neuron (1)
Permanent cell line cell (1)
Plant cell (1)
Retinal pigment epithelium (1)
Retinal pigment epithelium cell (1)
T cell (1)

Disease

Cardiovascular system disease (2)
T. circumcincta infection (1)
Normal (1)
Acute leukemia (1)
Bone sarcoma (1)
Disease free (1)
Glycogen storage disease (1)
Huntington Disease (1)
Influenza (1)
Malignant neoplasm of ovary (1)
Multiple myeloma (1)
Severe acute respiratory syndrome (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (58)
Bottom-up proteomics (20)
Shotgun proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-dependent acquisition (9)
Gel-based experiment (8)
Mass spectrometry (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Data-independent acquisition (2)
Top-down proteomics (2)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina NovaSeq 6000 (10)
Illumina HiSeq 4000 (5)
Direct infusion MS - negative (4)
Hamamatsu Nanozoomer S60 (1)
Agilent Tapestation 4200 (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Nuclear Magnetic Resonance (NMR) - - - Varian (1)
Direct infusion MS - (1)
Direct infusion MS - positive (1)
Nuclear Magnetic Resonance (NMR) - - - Bruker (1)
Bruker (1)

Publication Date

2022 (18)
2025 (17)
2024 (10)
2026 (9)
2021 (8)
2013 (5)
2017 (5)
2023 (5)
2019 (5)
2016 (3)
2011 (3)
2020 (2)
2015 (2)
2014 (1)
2012 (1)
2004 (1)
2010 (1)
2018 (1)

CHEBI ID

CHEBI:138900 (2)
CHEBI:85698 (2)
CHEBI:17925 (2)
CHEBI:17992 (2)
CHEBI:27570 (2)
CHEBI:17724 (2)
CHEBI:24898 (2)
CHEBI:28842 (2)
CHEBI:15428 (2)
CHEBI:15891 (2)
CHEBI:78320 (2)
CHEBI:138909 (1)
CHEBI:138901 (1)
CHEBI:138903 (1)
CHEBI:138910 (1)
CHEBI:138895 (1)
CHEBI:138908 (1)
CHEBI:138902 (1)
CHEBI:138906 (1)
CHEBI:138918 (1)
CHEBI:138896 (1)
CHEBI:138915 (1)
CHEBI:72506 (1)
CHEBI:138898 (1)
CHEBI:65291 (1)
CHEBI:138912 (1)
CHEBI:138917 (1)
CHEBI:138913 (1)
CHEBI:138911 (1)
CHEBI:138905 (1)

Metabolite Name

Glycine (2)
Taurine (2)
HexCer(d32:1) (1)
PIP(O-38:5) (1)
PI(35:1) (1)
MIPC(m35:0) (1)
HexCer(d33:2) (1)
LacCer(t32:2) (1)
PI(P-34:2) (1)
PI(O-34:3) (1)
LPS(34:0) (1)
WE(51:0) (1)
Cer(d49:0) (1)
PS(33:1) (1)
DG(36:5) (1)
Pi-methylhistidine (1)
PS(O-34:0) (1)
PE(44:11) (1)
Tau-methylhistidine (1)
PE(31:1) (1)
TG(53:0) (1)
TG(62:4) (1)
TG(57:6) (1)
TG(60:4) (1)
TG(O-58:6) (1)
TG(O-56:6) (1)
TG(57:5) (1)
TG(51:5) (1)
SM(d42:0) (1)
TG(36:0) (1)

First Public Date

2020 (3)
2024 (2)
2022 (2)
2025 (1)
2017 (1)
2014 (1)
2013 (1)

Modification

N6 (1)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA from single cells (8)
RNA-seq of coding RNA (6)
ATAC-seq (2)
Human - Single-cell sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (80)
2025 (77)
2024 (76)
2021 (72)
2023 (59)
2020 (44)
2018 (33)
2019 (32)
2016 (25)
2017 (23)
2015 (16)
2014 (10)
2026 (10)
2013 (9)
2010 (7)
2012 (6)
2011 (5)
2009 (2)
2004 (1)
2008 (1)
2006 (1)
2002 (1)

Lab affiliation

Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine (2)
Carnegie MS Facility (2)
Center for Tropical and Emerging Global Diseases and Department of Cellular Biology, Moreno lab, University of Georgia, United States of America (2)
Institute for Molecular Infection Biology, Julius Maximilian University Wuerzburg Helmholtz Institute for RNA-based Infection Research, Helmholtz Centre for Infection Research, Wuerzburg (2)
Seoul National University (2)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Biotechnology Research Center, Shandong Academy of Agricultural Sciences; Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, Shandong, China (1)
CECAD Research Center, Institute for Genetics, University of Cologne, 50931 Cologne, Germany (1)
CECAD Research Center, Institute for Genetics, University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany (1)
Center for Mechanisms of Evolution, Biodesign Institute, School of Life Sciences, Arizona State University, Tempe, Arizona, USA (1)
Center for Tropical and Ememrging Global Diseases and Department of Cellular Biology, Moreno lab, University of Georgia, United States of America (1)
Center for Tropical and Emerging Global Diseases; Department of Cellular Biology, University of Georgia, Athens, Georgia, USA (1)
Claudia Fecher-Trost Experimental and Clinical Pharmacology and Toxicology, Center for Molecular Signaling (PZMS), Saarland University, Buildings 46, D-66421 Homburg, Germany (1)
Core Unit Mass Spectrometry and Proteomics Medical faculty Ulm University Germany (1)
Department of Biochemistry & Molecular Biology, Michigan State University (1)
Department of Biochemistry and Molecular Biology. University of the Basque Country (EHU) (1)
Department of Biochemistry, Max F. Perutz Laboratories, University of Vienna, Dr. Bohrgasse 9, 1030 Vienna, Austria (1)
Department of Computational, Cellular, Integrative Biology (DeCIBIO), University of Trento 38123, TN, Italy (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA Center for Individualized Medicine, Mayo Clinic, Rochester, MN 55905, USA (1)
Department of Microbiology, College of Medicine, Hallym University, Chuncheon, Republic of Korea (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea (1)
Department of Pathology, University of Cambridge (1)
Department of Pathology, University of Cambridge, Cambridge, UK (1)
Department of Pediatrics, University of Groningen, University Medical Center Groningen; Groningen, The Netherlands (1)
Eppley Institute for Research in Cancer University of Nebraska Medical Center (1)
Group Leader, Quattrocolo Lab, Kavli Institute for Systems Neuroscience and Centre for Neural Computation, Norwegian University of Science and Technology (NTNU), Trondheim 7491, Norway (1)
Institute for Genetics, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), Cologne, Germany (1)
Institute of Science and Technology Austria (ISTA) (1)
Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 58 Abrahama St., 80-307 Gdansk, Poland (1)

Tags

xref:PubMed:38571711 (1)
xref:PubMed:35770682 (1)
xref:PubMed:40646804 (1)
xref:PubMed:40723406 (1)
xref:PubMed:21821598 (1)

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Bolt: A new age peptide search engine for comprehensive MS/MS sequencing through vast protein databases in minutes

The standard platform for proteomics experiments today is mass spectrometry, particularly for samples derived from complex matrices. Recent increases in mass spectrometry sequencing speed, sensitivity and resolution now permit comprehensive coverage of even the most precious and limited samples, par...

ORGANISM(S): Homo sapiens (Human)

2019-08-29 | PXD012700 | Pride