Bruker timstof - OmicsDI

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Proteomics (1644)
Unknown (39)
Metabolomics (26)
Genomics (5)
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Homo sapiens (1566)
Mus musculus (1566)
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Arabidopsis thaliana (1565)
Listeria monocytogenes (1565)
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Methylohalobius crimeensis 10Ki (1564)
Homo sapiens (19)
Mus musculus (6)
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Rattus norvegicus (2)
Drosophila melanogaster (2)
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Organisms

Homo sapiens (3)

Repository

pride (1566)
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Tissue

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Disease

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Non-small cell lung carcinoma (4)
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Technology Type

Mass Spectrometry (1566)
Bottom-up proteomics (648)
Shotgun proteomics (424)
Data-independent acquisition (408)
Data-dependent acquisition (326)
DiaPASEF (99)
Affinity purification coupled with mass spectrometry proteomics (93)
SWATH MS (75)
Top-down proteomics (38)
All-ion fragmentation (21)
Chemical cross-linking coupled with mass spectrometry proteomics (21)
Gel-based experiment (19)
Affinity proteomics (15)
Mass spectrometry (12)
Mass spectrometry assay (8)
Immunopeptidomics (7)
SRM/MRM (7)
Mass spectrometry imaging (5)
MSE (3)
Metaproteomics (3)
Proteogenomics (3)
Glycoproteomics (1)

Instrument Platform

TimsTOF fleX (13)
TimsTOF Pro (12)
Liquid Chromatography MS - positive - reverse phase (12)
Liquid Chromatography MS - negative - reverse phase (9)
TimsTOF (6)
TimsTOF Pro 2 (5)
Liquid Chromatography MS - positive - hilic (4)
TimsTOF SCP (3)
Bruker TimsTof Pro (2)
Bruker timsTOF Pro (2)
TimsTOF fleX MALDI-2 (2)
MS Imaging - (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
6560 Ion Mobility Q-ToF (Agilent instrument model) (1)
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Q Exactive HF (1)
RapidFire 365 coupled with Agilent 6560 Ion Mobility QTOF (1)
SLIM TWIMS-MS coupled with Agilent 6224 TOF (1)
Synapt MS (1)
TimsTOF (Bruker instrument model) (1)
TimsTOF HT (1)
TimsTOF HT (Bruker Daltonics timsTOF series) (1)
TimsTOF Pro (Bruker Daltonics) (1)
TimsTOF Ultra (Bruker Daltonics timsTOF series) (1)
TripleTOF 5600 (1)
TripleTOF 6600 (1)

CHEBI ID

CHEBI:15940 (3)
CHEBI:16467 (3)
CHEBI:17191 (3)
CHEBI:15603 (3)
CHEBI:17295 (3)
CHEBI:16708 (2)
CHEBI:15741 (2)
CHEBI:17781 (2)
CHEBI:17015 (2)
CHEBI:16566 (2)
CHEBI:16196 (2)
CHEBI:17750 (2)
CHEBI:17203 (2)
CHEBI:15891 (2)
CHEBI:18050 (2)
CHEBI:16015 (2)
CHEBI:18012 (2)
CHEBI:32816 (2)
CHEBI:16919 (2)
CHEBI:16414 (2)
CHEBI:57589 (2)
CHEBI:35280 (2)
CHEBI:15354 (2)
CHEBI:17895 (2)
CHEBI:16828 (2)
CHEBI:17351 (2)
CHEBI:18344 (2)
CHEBI:17368 (2)
CHEBI:30769 (2)
CHEBI:137510 (1)

Metabolite Name

L-isoleucine (3)
O-propanoyl-L-carnitine (2)
Oleoyl Ethanolamide (2)
O-acetyl-L-carnitine (2)
L-phenylalanine (2)
N1-Acetylspermidine (2)
N1,N12-Diacetylspermine (2)
Indole (2)
Choline (2)
LPC 18:0 (2)
LPC 16:0 (2)
Oleamide (2)
Sphinganine (2)
Level 5 (1)
ST 27:0;O5 (1)
ST 26:4;O2;Gly (1)
ST 26:3;O2;Gly (1)
ST 26:2;O2 (1)
ST 26:1;O2 (1)
ST 26:0;O5 (1)
ST 24:5;O3 (1)
ST 24:1;O4;Tau (1)
ST 24:1;O3 (1)
ST 21:4;O2 (1)
ST 21:1;O3 (1)
ST 20:1;O2;S (1)
ST 19:2;O (1)
ST 19:0 (1)
ST 18:1;O2;S (1)
SPB 20:3;O (1)

First Public Date

2023 (3)

Modification

2x(15)N labeled L-lysine (3)
4-tetrahydrothiazine-3-carboxylic acid (3)
4x(15)N labeled L-arginine (3)
4x(2)H labeled dimethylated residue (1)
Not available (1)

Release Date

2025 (10)
2023 (8)
2022 (6)
2021 (5)
2024 (4)
2020 (3)
2026 (1)
2019 (1)
2018 (1)

Lab affiliation

Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (30)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (30)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (29)
UCSD (15)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (12)
Head of Proteomics (12)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (11)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (8)
Imperial College London (8)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (7)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (5)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (5)
Shenzhen People’s Hospital (5)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
DZNE Munich / TU Munich (4)
Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branisovska 1160/31, 37005 Ceske Budejovice, Czech Republic (4)
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen (4)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (4)
The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (4)
Third Military Medical University (4)
UCSF (4)
University of Missouri (4)
University of South Florida (4)
Aalborg University (3)
Biognosys AG (3)
Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (3)
Crick-GSK LinkLabs, UK (3)
Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (3)
Department of Cell & Developmental Biology, University of California, San Diego, CA 92093, USA. (3)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (3)

Publication date

2025 (610)
2026 (360)
2024 (279)
2023 (218)
2022 (105)
2021 (58)
2020 (20)
2019 (3)
2018 (1)

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Comparison of popular enrichment methods for untargeted in vitro metabolomics.

Introduction

Untargeted metabolomics is a popular method by which researchers measure a large portion of the metabolites present in a biological system at once. This approach usually results in complex data sets containing tens to hundreds of thousands of observations whi...

2025-08-11 | MTBLS12332 | MetaboLights

Vacuum insulated probe heated electrospray ionization source (VIP-HESI) significantly enhances micro flow rate chromatography signals in the Bruker timsTOF mass spectrometer.

Nano-flow chromatography-tandem mass spectrometer (nLC-MS/MS) is a popular choice in proteome research as it provided high-sensitivity analysis with minimal sample usage, but its quantitative proteomics applications become restricted by low analytical throughput, and low robustness. To circumvent th...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2023-05-24 | PXD040497 | Pride

dia-PASEF HeLa dilution series 0.2ng - 200ng on Bruker timsTOF Pro 2

Different sample preparation methods were tested for HeLa proteome analysis. A sample obtained using sodium deoxycholate-based lysis allowed identification of the highest number of proteins. For this sample, a dilution series was acquired in triplicates ranging from 0.2ng to 200ng. All measurements ...

ORGANISM(S): Homo sapiens (Human)

2022-06-20 | PXD029836 | Pride

Dia-pasef diapasef dia-nn hela

A de novo MS1 feature detector for the Bruker timsTOF Pro.

Not available

S-EPMC9710787 | biostudies-literature

A Multimodal SIMS/MALDI Mass Spectrometry Imaging Source with Secondary Electron Imaging Capabilities for Use with timsTOF Instruments.

Not available

S-EPMC10080675 | biostudies-literature

Vacuum Insulated Probe Heated Electrospray Ionization Source Enhances Microflow Rate Chromatography Signals in the Bruker timsTOF Mass Spectrometer.

Not available

S-EPMC11060334 | biostudies-literature

Oxonium Ion-Guided Optimization of Ion Mobility-Assisted Glycoproteomics on the timsTOF Pro.

Not available

S-EPMC9853368 | biostudies-literature

Vacuum Insulated Probe Heated ElectroSpray Ionization source (VIP-HESI) enhances micro flow rate chromatography signals in the Bruker timsTOF mass spectrometer.

Not available

S-EPMC9949110 | biostudies-literature

PASEF technology on timsTOF Pro improves quality of FPOP analysis

Fast photochemical oxidation of proteins (FPOP) is a modern technique for studying protein folding, conformations, interactions, etc. In this work, timsTOF Pro mass spectrometer coupled with trapped ion mobility spectrometry was used for identification of oxidative modifications in a model protein. ...

ORGANISM(S): Homo sapiens (Human)

2021-06-10 | PXD020509 | Pride

Tims Pasef Timstof Protein footprinting Hydroxyl radical Fpop

High-Performance Molecular Imaging with MALDI Trapped Ion-Mobility Time-of-Flight (timsTOF) Mass Spectrometry.

Not available

S-EPMC7382025 | biostudies-literature

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