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ProteomicsA proteomics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees
Secretory Carrier-Associated Membrane Proteins (SCAMPs) are highly conserved 32–38 kDa proteins that are involved in membrane trafficking. A proteomics approach was taken to elucidate function of the SCAMPs in wood formation of transgenic Populus trees carrying an RNAi construct for Populus tremula ...
ORGANISM(S): Populus tremula x Populus tremuloides 
2018-01-10 | PXD008266 | Pride
Hdmse Wood formation Populus Xylem 
ProteomicsProteomic analysis in transgenic hybrid aspen (Populus tremula x tremuloides) trees overexpression of vesicle-associated membrane protein PttVAP27-17
In this study we report on transgenic hybrid aspen (Populus tremula x P. tremuloides) lines that showed potential to increase biomass production both in the greenhouse and after five years of growth in the field. The transgenic lines carried an overexpression construct for Populus tremula x tremuloi...
ORGANISM(S): Populus tremula x Populus tremuloides 
2021-09-10 | PXD023826 | Pride
Hdmse Wood Populus 
ProteomicsNuclear Proteins in Chlamydomonas reinhardtii
A proteomic approach to identify and quantify differences in the nuclear proteome under high- and low-CO2 conditions with special emphasis on transcription factors and transcription regulators in Chlamydomonas reinhardtii.
ORGANISM(S): Chlamydomonas reinhardtii 
2020-02-07 | PXD006487 | Pride
Co2-concentrating mechanism Hdmse Chlamydomonas Nucleus proteome Lc-ms/ms 
MetabolomicsOverexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees

Background

Bioconversion of wood into bioproducts and biofuels is hindered by the recalcitrance of woody raw material to bioprocesses such as enzymatic saccharification. Targeted modification of the chemical composition of the feedstock can improve saccharification but this gain is often abr...
2021-10-06 | MTBLS628 | MetaboLights
ProteomicsSOD cambium Proteomics Data - OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants
Reactive oxygen species (ROS) are involved in the regulation of diverse physiological processes in plants, including various biotic and abiotic stress responses. Thus, oxidative stress tolerance mechanisms in plants are complex, and diverse responses at multiple levels need to be characterized in or...
ORGANISM(S): Populus tremula x Populus tremuloides 
2014-04-17 | PXD000532 | Pride
Data integration Cambium Superoxide dismutase Onpls 
ProteomicsProtein Expression in TW Formation
Tangential sections of 30 µm thickness were taken across the secondary phloem and developing secondary xylem, sections were then pooled to represent the tissues from specific developmental stages. Phloem (P) comprises 3 sections, the cambium (C) - 2 sections, the radial expansion zone (E) - 4 sectio...
ORGANISM(S): Populus tremula 
2017-06-23 | PXD005715 | Pride
Lc-ms Populus Tension wood 
ProteomicsRho-kinase inhibitor Y-27632 and hypoxia synergistically enhance chondrocytic phenotype and change the S100 protein profile in human chondrosarcoma cells
Different kinds of cell-based therapies and tissue engineering applications need in vitro cultured differentiated chondrocytes. However, articular chondrocytes are slowly dividing cells, which in culture tend to lose their cell type-specific phenotype and ability to produce structurally and function...
ORGANISM(S): Homo sapiens (Human) 
2017-06-22 | PXD005551 | Pride
Human Lc/ms Chondrosarcoma 
ProteomicsPopulus metacaspases - The function of two type II metacaspases in woody tissues of Populus trees
Metacaspases (MCs) are cysteine proteases that are implicated in programmed cell death of plants. AtMC9 (Arabidopsis thaliana Metacaspase9) is a member of the Arabidopsis MC family that controls the rapid autolysis of the xylem vessel elements, but its downstream targets in the xylem remain uncharac...
ORGANISM(S): Populus tremula x Populus tremuloides 
2018-01-02 | PXD007958 | Pride
Lc-mse Metacaspase Populus Cell death Wood formation 
MetabolomicsA multi-omics approach reveals functions of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees
Secretory Carrier-Associated Membrane Proteins (SCAMPs) are highly conserved proteins that are involved in membrane trafficking. An integrated approach was taken to elucidate function of SCAMPs in wood formation of Populus trees. The metabolomics analyses were performed in woody tissues of transgeni...
2018-01-08 | MTBLS478 | MetaboLights
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