Cell membrane-enriched proteins

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Unknown (1082)
Transcriptomics (822)
Proteomics (641)
Genomics (345)
Other (15)
Metabolomics (15)

Organisms

Homo sapiens (399)
Mus musculus (255)
Caenorhabditis elegans (69)
Saccharomyces cerevisiae (68)
Drosophila melanogaster (67)
Arabidopsis thaliana (25)
Rattus norvegicus (24)
Escherichia coli (17)
Schizosaccharomyces pombe (12)
Mycobacterium tuberculosis (9)
Macaca mulatta (8)
Staphylococcus aureus (8)
Escherichia coli str. K-12 substr. MG1655 (8)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (7)
Triticum aestivum (7)
Bos taurus (7)
Rhizobium leguminosarum (6)
Campylobacter jejuni (6)
Sus scrofa (6)
Danio rerio (5)
Thermus thermophilus HB8 (4)
Phaeodactylum tricornutum (4)
Neisseria meningitidis (4)
Glycine max (4)
Helicobacter pylori (4)
Bacillus subtilis (4)
Klebsiella pneumoniae (3)
Escherichia coli K-12 (3)
Rhodospirillum rubrum (2)
Pyrococcus furiosus DSM 3638 (2)

Organisms

Homo sapiens (44)
Mus musculus (21)
Candida albicans (2)
Haloferax volcanii (2)
Caenorhabditis elegans (2)
Rattus norvegicus (2)
Drosophila melanogaster (2)
Trichoplusia ni (1)
Verticillium dahliae (1)
Pseudomonas simiae (1)
Bacillus subtilis (1)
Helicobacter pylori (1)
Plasmodium berghei (1)
Zea mays (1)
Escherichia coli (1)

Repository

biostudies-arrayexpress (1038)
pride (467)
ENA (90)
MassIVE (76)
geo (66)
iProX (28)
jPOST (22)
MetaboLights (15)
GPMDB (12)
PeptideAtlas (12)
PanoramaPublic (6)
PAXDB (4)
EGA (3)

Tissue

Cell culture (148)
Epithelial cell (52)
Brain (39)
Plant cell (22)
Cell suspension culture (18)
Fibroblast (14)
Permanent cell line cell (14)
Heart (13)
Blood (12)
Others (10)
Root (10)
Liver (10)
Kidney (9)
B cell (9)
Blood cell (9)
Prokaryotic cell (8)
Primary cell (7)
Lung (7)
Blood plasma (6)
Stem cell (6)
Erythrocyte (6)
T cell (6)
Extracellular vesicle (5)
HeLa cell (5)
Leaf (5)
Astrocyte (4)
Mesenchymal cell (4)
Macrophage (4)
Hepatocyte (4)
Monocyte (4)

Disease

Breast cancer (15)
Not Available (12)
Disease free (12)
Alzheimer's disease (8)
Normal (7)
Multiple myeloma (4)
Colorectal cancer (3)
Squamous Cell Carcinoma (2)
Mammary tumor (2)
Amyotrophic lateral sclerosis (2)
Pancreatic ductal adenocarcinoma (2)
Retinoblastoma (1)
HIV encephalitis (1)
Breast Carcinoma (1)
Myeloid neoplasm (1)
Embryonic lethal at day 8.5 to 9.5 (1)
MFC II (1)
Mammary adenocarcinoma (pleural effusion) (1)
No local recurrence (1)
Triple negative breast cancer (1)
Chronic granulomatous disease (1)
Oligodendroglioma (1)
Breast adenocarcinoma (1)
IRAK-4 Q293X mutation (1)
ARR1-SRDX (1)
Invasive lobular carcinoma (1)
Cirrhosis (1)
Temporal lobe epilepsy (1)
Cancer (1)
S enteritidis (1)

Technology Type

Mass Spectrometry (467)
Shotgun proteomics (280)
Bottom-up proteomics (87)
Affinity purification coupled with mass spectrometry proteomics (48)
Gel-based experiment (45)
Data-dependent acquisition (41)
Data-independent acquisition (21)
Mass spectrometry (10)
SWATH MS (10)
Top-down proteomics (10)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
SRM/MRM (7)
Mass spectrometry assay (4)
MSE (3)
All-ion fragmentation (3)
DiaPASEF (3)
HDMSE (3)
Affinity proteomics (2)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Metaproteomics (1)

Instrument Platform

NextSeq 500 (21)
Illumina NovaSeq 6000 (20)
Illumina HiSeq 2000 (19)
Illumina HiSeq 4000 (14)
Illumina HiSeq 2500 (11)
Illumina MiSeq (6)
Variable Atmosphere Incubator (5)
Axon GenePix 4000B scanning hardware (5)
NanoDrop (4)
Illumina Genome Analyzer II (4)
Scanning hardware (4)
ScanArray 4000 [PerkinElmer] (3)
Illumina Genome Analyzer IIx (3)
Vortex (3)
Illumina NovaSeq X (3)
Axon Instruments GenePix 4000B scanner (2)
Bellco roll-in incubator (2)
418 [Affymetrix] (2)
G2565BA DNA microarray scanner [Agilent] (2)
NextSeq 2000 (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Nanodrop 2000c spectrophotometer (1)
NEBNext Ultra II Directional RNA Library Prep Kit (1)
RNeasy Plant Mini Kit (Qiagen, Hilden, Germany) (1)
Zephyr G3 NGS workstation (1)
MiRNeasy Micro kit (1)
Radial JawTM (1)
PromethION (1)
Illumina Genome Analyser II (1)

Publication Date

2013 (160)
2010 (134)
2015 (118)
2011 (101)
2014 (96)
2022 (91)
2021 (89)
2025 (87)
2016 (87)
2024 (85)
2012 (84)
2026 (83)
2008 (80)
2023 (78)
2009 (67)
2019 (52)
2020 (51)
2018 (44)
2017 (40)
2007 (40)
2005 (26)
2006 (25)
2004 (8)
2002 (1)

UNIPROT ID/AC

DJB11_RAT (3)
RIPR1_RAT (3)
RAP2B_RAT (3)
NINJ1_RAT (3)
P5CR2_RAT (3)
D3ZQM0_RAT (3)
D4ABM5_RAT (3)
EPS8_RAT (3)
HNRH1_RAT (3)
RS9_RAT (3)
PTSS2_RAT (3)
MARCS_RAT (3)
B5DFB0_RAT (3)
ARL5A_RAT (3)
VATL_RAT (3)
D3ZJR6_RAT (3)
AT2A2_RAT (3)
D3ZPN5_RAT (3)
RM14_RAT (3)
CBPD_RAT (3)
COR1A_RAT (3)
AKTIP_RAT (3)
TM254_RAT (3)
RL29_RAT (3)
D3Z917_RAT (3)
GBA2_RAT (3)
BASI_RAT (3)
RISC_RAT (3)
UBX2B_RAT (3)
M0R402_RAT (3)

ENSEMBL ID

ENSG00000170477 (10)
ENSG00000147251 (4)
ENSMUSP00000141097 (2)
ENSMUSG00000072849 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:64561 (3)
CHEBI:64563 (3)
CHEBI:48430 (3)
CHEBI:17533 (3)
CHEBI:16449 (3)
CHEBI:27897 (3)
CHEBI:16335 (3)
CHEBI:134574 (2)
CHEBI:137836 (2)
CHEBI:134572 (2)
CHEBI:16654 (2)
CHEBI:72534 (2)
CHEBI:72529 (2)
CHEBI:72523 (2)
CHEBI:72518 (2)
CHEBI:72528 (2)
CHEBI:85750 (2)
CHEBI:36313 (2)
CHEBI:15682 (2)
CHEBI:72519 (2)
CHEBI:72514 (2)
CHEBI:85749 (2)
CHEBI:85842 (2)
CHEBI:85876 (2)
CHEBI:85741 (2)
CHEBI:85742 (2)
CHEBI:85743 (2)
CHEBI:84660 (2)
CHEBI:84661 (2)
CHEBI:85736 (2)

Metabolite Name

Glutaric acid (4)
Dihydroxyacetone phosphate (4)
Galactaric acid (3)
Glucose (3)
Maltitol (3)
Embelin (3)
Succinate (3)
Raffinose (3)
Sarcosine (3)
Methylmalonic acid (3)
Pantothenic acid (3)
Maleic acid (3)
Phenylalanine (3)
Ketoleucine (3)
Oleic acid (3)
Azelaic acid (3)
Adipic acid (3)
Adenine (3)
Pyruvate (3)
Pyruvaldehyde (3)
Mesaconic acid (3)
Dodecanoic acid (3)
Undecanedioic acid (3)
Lactate (3)
Canrenone (3)
Sucrose (3)
Dihydrogen phosphate (2)
4'-Hydroxyacetophenone 4'-[4-hydroxybenzoyl-(->5)-apiosyl-(1->2)-glucoside] (2)
(R)-4-Dehydropantoate (2)
1-Octen-3-one (2)

First Public Date

2025 (18)
2014 (15)
2026 (13)
2024 (13)
2023 (5)
2021 (5)
2018 (4)
2019 (3)
2017 (3)
2016 (3)
2015 (3)
2022 (2)
2020 (2)
2013 (1)

Classification

fungi (2)
bacteria (2)
protozoa (1)

Modification

Not available (2)
4x(2)H labeled dimethylated residue (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (441)
ChIP-seq (221)
RNA-seq of coding RNA (97)
ChIP-chip by array (57)
ChIP-chip by tiling array (44)
Other (26)
Proteomic profiling by array (25)
Unknown experiment type (15)
Comparative genomic hybridization by array (15)
Methylation profiling by array (15)
Methylation profiling by high throughput sequencing (15)
RNA-seq of non coding RNA (15)
RNA-seq of total RNA (8)
DNA-seq (7)
Transcription profiling by SAGE (5)
CLIP-seq (4)
RNA-seq of coding RNA from single cells (4)
Human - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
Genotyping by array (3)
RNAi profiling by array (2)
RNA-seq of non coding RNA from single cells (1)
Animal - Single-cell sequencing (1)
Cell line - One-color microarray (1)
Translation profiling (1)
Antigen profiling (1)
ATAC-seq (1)
RIP-seq (1)
CUT&RUN (1)

Release Date

2013 (191)
2010 (156)
2015 (135)
2011 (126)
2014 (122)
2022 (114)
2012 (113)
2008 (105)
2021 (102)
2023 (100)
2016 (98)
2020 (93)
2009 (90)
2024 (87)
2025 (83)
2019 (68)
2018 (66)
2017 (62)
2007 (55)
2006 (37)
2005 (33)
2026 (32)
2004 (12)
2002 (8)
2000 (7)
2003 (6)
1997 (6)
2001 (5)
1999 (5)
1998 (3)

Lab affiliation

Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (5)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (3)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (3)
EPFL (3)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, 25242 Vestec, Czech Republic (3)
University of Wisconsin-Madison (3)
The University of Melbourne (3)
GSK Chair in Chemical Biology, Imperial College London Satellite Group Leader, Francis Crick Institute Founder & SAB, Myricx Bio https://myricxbio.com/ Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK Tel.: 020759 + Ext. 43752 or 45821 (group) http://www.imperial.ac.uk/tate-group/ (2)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 82 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing, Jiangsu,China. (2)
Department of Plant Physiology and Biochemistry, University of Hohenheim, 70599 Stuttgart, Germany (2)
Institute of Chemistry, Academia Sinica (2)
Department of Biochemistry, University of Cambridge, UK (2)
Functional Genomics, University Medicine Greifswald, Germany (2)
Duke University Eye Center (2)
School of Biosciences University of Sheffield Sheffield, S10 2TN United Kingdom (2)
Ph.D., Professor, Vice Dean (2)
Children's Hospital of Philadelphia (2)
1. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada; 2. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada; 3. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada; 4. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada (2)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
Cedars-Sinai Medical Center (2)
Cambridge Institute for Medical Research, University of Cambridge (2)
Department of Cell Biology, School of Medicine, Johns Hopkins University, Baltimore, MD, USA (2)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany (2)
Department of Pharmaceutics, School of Pharmaceutical Sciences of Wenzhou Medical University (2)
Cornell University (2)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Department of Emergency Medicine, Xinqiao Hospital, Army Medical University, 83 Xinqiao Street, Shapingba District, Chongqing 400037, China (1)
Laboratório de Pesquisa em Leishmanioses, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, RJ, Brasil (1)

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Lipidomic analysis of Toxoplasma gondii extracellular vesicles across host cell types

Introduction. Toxoplasma gondii is an obligate intracellular parasite with an exceptional capacity to colonize a broad range of host species and cell types. Successful infection depends on its ability to manipulate host metabolism, including lipid pathways that are essential for membrane biogenes...

2026-02-11 | MTBLS13253 | MetaboLights

Membrane-Enriched Brain Proteome Across Stages of Alzheimer's Disease

Previous systems-based proteomic approaches have characterized alterations in protein co-expression networks of unfractionated asymptomatic (AsymAD) and symptomatic Alzheimer’s disease (AD) brains. However, it remains unclear how sample fractionation and sub-proteomic analysis influences the organi...

ORGANISM(S): Homo sapiens (Human)

2019-09-02 | PXD014376 | Pride

Ad Synaptic proteome Transmembrane proteins

Mouse bone marrow derived neutrophils, LC-MSMS

Analysis of cell membrane-enriched proteins of mouse polymorphonuclear neutrophils. Further related data are present in project PXD003015.

ORGANISM(S): Mus musculus (Mouse)

2015-07-20 | PXD002244 | Pride

Polymorphonuclear neutrophils Mouse Cell membrane-enriched proteins

Mouse bone marrow derived neutrophils, LC-MSMS

Analysis of cell membrane-enriched proteins of mouse polymorphonuclear neutrophils. Further related data are present in project PXD002244.

ORGANISM(S): Mus musculus (Mouse)

2015-10-09 | PXD003015 | Pride

Polymorphonuclear neutrophils Mouse Cell membrane-enriched proteins

Yeast Membrane Bound Polysome

Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. mRNA species bound to membrane-associated polysomes were separated from other mRNAs by sedimentation equilibrium or sedimentation velocity. The distribution of individual transcripts in the 'membran...

ORGANISM(S): Saccharomyces cerevisiae

2005-08-24 | E-GEOD-3180 | biostudies-arrayexpress

Perilipin 3 promotes the formation of membrane domains enriched in diacylglycerol and lipid droplet biogenesis proteins.

Not available

S-EPMC10350540 | biostudies-literature

Bioinformatic analysis of membrane and associated proteins in murine cardiomyocytes and human myocardium

In the current study we examined several proteomic- and RNA-Seq-based datasets of cardiac-enriched, cell-surface and membrane-associated proteins in human fetal and mouse neonatal ventricular cardiomyocytes. By integrating available microarray and tissue expression profiles along with MGI phenotypic...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2020-11-17 | PXD017732 | Pride

Bioinformatics Therapeutics Cardiomyocytes Membrane proteins Heart disease

Detection of immunogenic proteins from bacteria

Detection of immunogenic proteins remains an important task for life sciences as it nourishes the understanding of pathogenicity, illuminates new potential vaccine candidates and broadens the spectrum of biomarkers applicable in diagnostic tools. Traditionally, immunoscreenings of expression librari...

ORGANISM(S): Campylobacter jejuni

2011-10-26 | E-GEOD-33295 | biostudies-arrayexpress

Profiling antibody responses to M. tuberculosis proteins in TB suspects’ sera using full-proteome microarrays.

Understanding the immune response to tuberculosis requires greater knowledge of humoral responses. To characterize antibody targets and the effect of disease parameters on target recognition, we developed a systems immunology approach that integrated detection of antibodies against the entire Mycob...

ORGANISM(S): Homo sapiens

2010-07-13 | E-GEOD-19433 | biostudies-arrayexpress

Glioblastoma microvesicles transport RNA and proteins

Glioblastoma tumour cells release microvesicles (exosomes) containing mRNA, miRNA and angiogenic proteins. These microvesicles are taken up by normal host cells, such as brain microvascular endothelial cells. By incorporating an mRNA for a reporter protein into these microvesicles, we demonstrate th...

ORGANISM(S): Homo sapiens

2008-11-15 | E-GEOD-13470 | biostudies-arrayexpress

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2921 Results

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CHEBI ID

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