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ProteomicsChanges in the cell wall proteome of leaves in response to the high temperature stress in Brachypodium distachyon
High temperature stress leads to complex changes to plant functionality, which affects, i.a., the cell wall structure and the cell wall protein composition. In this study, the qualitative and quantitative changes in the cell wall proteome of Brachypodium distachyon leaves in response to high (40 °C)...
ORGANISM(S): Brachypodium Distachyon (ncbitaxon:15368) 
2021-04-28 | MSV000087323 | MassIVE
ProteomicsInvestigation of cell wall proteins of Camellia sinensis leaves by combining cell wall proteomics and N-glycoproteomics
Cell wall proteins (CWPs) probably play a vital role in fluoride accumulation/detoxification of C. sinensis leaves. However, there has been a lack in CWP identification and characterization up to now. This study is aimed to characterize cell wall proteome of C. sinensis leaves and to develop more CW...
ORGANISM(S): Camellia sinensis 
2022-02-17 | PXD026772 | Pride
Camellia sinensis  leaves  cell wall proteins 
TranscriptomicsDifferentially regulated genes induced by in vitro generated Mycobacterium smegmatis cell wall deficient form
Transcriptional profile of chemically generated Mycobacterium smegmatis cell wall deficient forms, comparing untreated control cells (bacillary forms) and cell wall deficient cells. Two-condition experiment, MSMEG-K vs. MSMEG-Sph cells. Biological replicates: 3 controls, 3 spheroplasts, independentl...
ORGANISM(S): Mycobacterium smegmatis str. MC2 155 
2012-11-29 | E-GEOD-32133 | biostudies-arrayexpress
ProteomicsCell wall enrichment unveils proteomic changes in the cell wall during treatment of Mycobacterium smegmatis with sub-lethal concentrations of Rifampicin
In this study, we successfully developed two gel-free approaches to specifically look at cell wall proteins in Mycobacterium smegmatis. The cell wall was subjected to differential centrifugation, differential detergent solubilisation and phase separation to yield the genuine cell wall proteome. The ...
ORGANISM(S): Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
2019-04-09 | PXD008075 | Pride
Cell wall proteomics Mycobacteria Mass spectrometry Rifampicin Tb drugs Tb Sub lethal 
TranscriptomicsDifferentially regulated genes induced by in vitro generated Mycobacterium avium subspecies paratuberculosis cell wall deficient forms
Transcriptional profile of chemically generated Mycobacterium avium subspecies paratuberculosis cell wall deficient forms, comparing untreated control cells (bacillary forms) and cell wall deficient cells. Two-condition experiment, MAP-K vs. MAP-Sph cells. Biological replicates: 3 controls, 3 sphero...
ORGANISM(S): Mycobacterium avium subsp. paratuberculosis 
2012-11-29 | E-GEOD-32235 | biostudies-arrayexpress
ProteomicsCell wall proteome of Tuwongella immobilis
Bacteria of the Planctomycetes phylum have many unique cellular features, such as extensive membrane invaginations and the ability to import macromolecules. These features raise intriguing questions about the composition of their cell envelopes. In this study, we have used microscopy, phylogenomics ...
ORGANISM(S): Tuwongella immobilis Bacteria 
2020-08-10 | PXD019121 | Pride
Planctomycetes Tuwongella immobilis Cell wall Lc-ms/ms 
ProteomicsBoth cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana
Cold acclimation (CA) leads to increased plant freezing tolerance during exposure to low, non-freezing temperatures as a result of many physiological, biochemical and molecular changes that have been extensively investigated. In addition, many plant species, such as Arabidopsis thaliana, respond to ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-11-12 | PXD010575 | Pride
Apoplast Proteome Sub-zero Freezing tolerance Cell wall Extracellular 
ProteomicsLabel-free quantitative proteomics reveals a role for the Mycobacterium tuberculosis SecA2 pathway in exporting solute binding proteins and Mce transporters to the cell wall
Mycobacterium tuberculosis is an example of a bacterial pathogen with a specialized SecA2-dependent protein export system that contributes to its virulence. Our understanding of the mechanistic basis of SecA2-dependent export and the role(s) of the SecA2 pathway in M. tuberculosis pathogenesis has b...
ORGANISM(S): Mycobacterium tuberculosis H37RvAE 
2018-10-24 | PXD002144 | Pride
Spectral counting Mycobacterium tuberculosis Seca2 Lc-ms/ms 
ProteomicsDynamic study of the cell wall integrity signaling pathway in Aspergillus nidulans
A phosphoproteomic evaluation of the cellular response to micafungin (cell wall perturbant) in the filamentous fungi, A. nidulans, reveals putative, currently unknown cell wall integrity signaling (CWIS) associated proteins. This study used thirteen timepoints were taken from 0 to 10 minutes after c...
ORGANISM(S): Emericella nidulans (Aspergillus nidulans) 
2020-07-16 | PXD015038 | Pride
Cell wall integrity signaling Dynamic Lfq Aspergillus nidulans Micafungin Phosphoproteomics 
ProteomicsStreptococcal S protein is a coordinator of cell wall repair and defense against host antimicrobials
Pathogenic bacteria have acquired the ability to resist antibacterial defense mechanisms of the host. Streptococci are common in animal microbiota and include opportunistic pathogens like Group A Streptococcus (GAS) and Streptococcus pneumoniae (pneumococcus). While the conserved streptococcal S pro...
ORGANISM(S): Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) 
2026-06-08 | PXD055534 | Pride
S-protein Cell wall repair Streptococcus pneumoniae Penicillin-binding protein 
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