Chang J J - OmicsDI

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Unknown (17154)
Transcriptomics (363)
Proteomics (355)
Genomics (83)
Metabolomics (42)
Multiomics (8)
Models (4)
Genomic (2)
Other (1)

Organisms

Homo sapiens (243)
Mus musculus (108)
Arabidopsis thaliana (24)
Corynebacterium glutamicum ATCC 13032 (10)
Triticum aestivum (7)
Glycine max (6)
Escherichia coli (6)
Saccharomyces cerevisiae (6)
Corynebacterium glutamicum (5)
Tetrahymena thermophila (4)
Populus tremula x Populus alba (4)
Euphorbia esula (3)
Populus trichocarpa x Populus deltoides (3)
Populus euphratica (3)
Rattus norvegicus (3)
Drosophila melanogaster (3)
Ursus americanus (2)
Populus balsamifera (2)
Chlamydomonas reinhardtii (2)
Picea glauca (2)
Schizosaccharomyces pombe (2)
Pseudomonas aeruginosa (2)
Nitrobacter winogradskyi (1)
Vitis labrusca x Vitis vinifera (1)
Trichinella spiralis (1)
Allium cepa (1)
Frankia alni ACN14a (1)
Aspergillus parasiticus (1)
Vitis riparia (1)
Eucalyptus grandis (1)

Organisms

Mus musculus (4)
Populus x canadensis (1)
gut metagenome (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (380)
pride (238)
iProX (88)
EGA (56)
MetaboLights (41)
MassIVE (21)
ENA (9)
jPOST (5)
BioModels (4)
PeptideAtlas (3)
dbGaP (2)
geo (1)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (48)
Epithelial cell (22)
Brain (18)
Blood plasma (12)
Lung (12)
Permanent cell line cell (12)
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Liver (10)
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Testis (7)
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Heart (6)
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Whole body (6)
Cell suspension culture (5)
B cell (4)
Blood (4)
Blood cell (4)
Blood serum (4)
Others (3)
Bone marrow (3)
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HeLa cell (3)
Pancreas (3)
Root (3)
Bone cell (2)
Cerebrospinal fluid (2)
Diploid cell (2)
Fungal cell (2)

Disease

Breast cancer (9)
Disease free (8)
Acute leukemia (5)
Cervix carcinoma (4)
Malignant neoplasm of ovary (4)
Normal (3)
Alzheimer's disease (3)
Cardiovascular system disease (3)
Influenza (3)
Non-small cell lung carcinoma (3)
ACUTE MYELOID LEUKEMIA (2)
Chronic lymphocytic leukemia (2)
COVID-19 (2)
Colon cancer (2)
Lung adenocarcinoma (2)
Lung small cell carcinoma (2)
Lymphoma (2)
Obesity (2)
Osteosarcoma (2)
Ovary epithelial cancer (2)
Pancreatic cancer (2)
Breast Normal (1)
CHRONIC LYMPHOCYTIC LEUKEMIA (1)
NORMAL (1)
B-cell chronic lymphocytic leukemia (1)
Colorectal cancer (1)
Small interference (1)
Prostate carcinoma (1)
Cervical cancer (1)
Not Available (1)

Technology Type

Mass Spectrometry (238)
Shotgun proteomics (117)
Bottom-up proteomics (47)
Mass spectrometry (38)
Data-dependent acquisition (25)
Affinity purification coupled with mass spectrometry proteomics (24)
Gel-based experiment (18)
SWATH MS (13)
Data-independent acquisition (12)
Top-down proteomics (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Immunopeptidomics (3)
Illumina HiSeq 2000 (2)
Proteogenomics (2)
SRM/MRM (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
AB SOLiD System 3.0 (1)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
MSE (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 2500 (6)
Illumina HiSeq 2000 (5)
Orbitrap Fusion Lumos (4)
Q Exactive HF-X (4)
Q Exactive (4)
NextSeq 500 (3)
MS:1000031 (3)
LTQ Orbitrap Elite (3)
Scanning hardware (2)
Illumina MiSeq (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Orbitrap Exploris 480 (2)
ShARC (1)
Agilent 2100 (1)
Axon GenePix 4000B scanner (1)
FACS (1)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
ScanArray 5000 [PerkinElmer] (1)
ScanArray 4000XL [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
NEBNext Ultra RNA Library Prep Kit for Illumina (New England BioLabs, Frankfurt am Main, Germany) (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
6560 Q-TOF LC/MS (1)
Instrument (1)
4000 QTRAP (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 240 (1)
Orbitrap Fusion (1)

Publication Date

2010 (84)
2022 (71)
2024 (57)
2025 (53)
2013 (51)
2014 (50)
2023 (49)
2021 (43)
2019 (36)
2020 (35)
2026 (34)
2012 (34)
2011 (34)
2015 (31)
2016 (26)
2009 (20)
2008 (15)
2005 (15)
2018 (14)
2017 (12)
2007 (9)
2006 (6)
2004 (2)
2003 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
Q8K4S1 (1)
P25106 (1)
Q718F0 (1)
P48061 (1)
P32121 (1)
P61073 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17568 (17)
CHEBI:30769 (16)
CHEBI:16708 (15)
CHEBI:15741 (15)
CHEBI:16704 (15)
CHEBI:17596 (15)
CHEBI:7916 (14)
CHEBI:15891 (14)
CHEBI:17822 (13)
CHEBI:26271 (13)
CHEBI:16335 (13)
CHEBI:32816 (13)
CHEBI:17368 (13)
CHEBI:16750 (12)
CHEBI:6650 (12)
CHEBI:16449 (12)
CHEBI:16015 (12)
CHEBI:18012 (12)
CHEBI:30915 (12)
CHEBI:16737 (12)
CHEBI:15354 (12)
CHEBI:28044 (11)
CHEBI:17750 (11)
CHEBI:18050 (11)
CHEBI:28874 (1)
CHEBI:30212 (1)
CHEBI:26034 (1)
CHEBI:16595 (1)
CHEBI:18035 (1)
CHEBI:18348 (1)

Metabolite Name

Uracil (9)
Inosine (9)
Adenosine (7)
Hypoxanthine (7)
Adenine (6)
Creatinine (6)
Alanine (6)
Glycine (6)
Kynurenic acid (6)
Citric acid (6)
Adenine (6)
Xanthine (6)
Guanosine (6)
Uridine (6)
Taurine (5)
Serine (5)
Proline (5)
Cysteine (5)
Methionine (5)
Glutamine (5)
Valine (5)
Leucine (5)
Putrescine (5)
Succinic acid (5)
Betaine (5)
L-Asparagine (5)
Choline (5)
Proline (5)
Azelaic acid (5)
Uric acid (5)

First Public Date

2025 (2)
2021 (2)
2014 (2)
2024 (1)
2023 (1)
2022 (1)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (2)

Lab affiliation

Beijing proteome research center (3)
Department of Chemistry and Chemical Biology, Harvard University (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Academia Sinica (2)
Boston University Medical Campus 670 Albany St., Rm. 509 Boston, MA 02118 USA (2)
Chair of Proteomics and Bioanalytics, Technical University of Munich (2)
Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (2)
Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA. (2)
Division of Internal Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Institute of Bioinformatics, Bangalore, Karnataka, India (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Sichuan university (2)
Universite de Montpellier LPHI UMR5235, France (2)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
1. Victor Chang Cardiac Research Institute, Darlinghurst, NSW, 2010 2. St Vincent’s Hospital, Darlinghurst, NSW, 2010 3. University of New South Wales Sydney, Kensington, NSW, 2052 (1)
1Seer, Inc., Redwood City, CA 94065, USA; 4Center for Nanomedicine and Department of Anesthesiology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA (1)
Allakos Inc. (1)
Associate Professor (1)
Associate Professor Purdue University (1)
Associate Professor of Chemistry, University of California, Riverside (1)
BMBB, University of Minnesota, USA (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 USA (1)
Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， Beijing 102206 P.R. China. (1)
Beijing proteome research center, Beijing, China (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. Wellcome Center for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom. (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Boston University School of Medicine (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (2)

Modification

2x(15)N labeled L-lysine (3)
4x(15)N labeled L-arginine (3)
4 (1)

Study type

Transcription profiling by array (220)
RNA-seq of coding RNA (55)
Unknown experiment type (39)
ChIP-seq (15)
MicroRNA profiling by array (10)
ATAC-seq (8)
Methylation profiling by array (5)
RNA-seq of non coding RNA (5)
Other (4)
Transcription profiling by SAGE (2)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
RIP-seq (2)
DNA-seq (2)
RNA-seq of total RNA (2)
Differential (1)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (2209)
2022 (2062)
2023 (1932)
2024 (1768)
2021 (1738)
2020 (1305)
2019 (1063)
2018 (907)
2016 (777)
2017 (755)
2015 (671)
2014 (532)
2013 (331)
2026 (295)
2012 (257)
2011 (252)
2010 (226)
2009 (122)
2008 (110)
2007 (56)
2005 (48)
2006 (33)
2004 (20)
2003 (15)
2000 (13)
2002 (11)
1999 (9)
1998 (8)
2001 (5)
1997 (1)

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Identification of Siglec-E-ligand candidates on BCL-1 mouse B cell line by proximity labeling

Siglec-E is a member of Siglec family of glycan recognition proteins involved in the regulation of myeloid cell activities. Siglec-E preferentially recognizes disialic acid, a glycan epitope consisting of two sialic acids conjugated in alpha2-8 linkage (Zhang JQ et al., Eur J Immunol. 2004, 34:1175...

ORGANISM(S): Mus musculus (Mouse)

2022-02-25 | PXD013032 | Pride

Identification of Siglec-7-ligand candidates on JVM-3 human B cell line by proximity labeling

Siglec-7 is a member of Siglec family of glycan recognition proteins involved in the regulation of natural killer (NK) cell activities. We found Siglec-7 ligand is highly expressed on JVM-3, a B cell chronic lymphocytic leukemia (B-CLL) cell line. In this experiment, we attempted at identifying th...

ORGANISM(S): Homo sapiens (Human)

2022-05-31 | PXD024690 | Pride

Human Lc-msms Siglec-7 Ligand B cell Sialic acid

Collaboration of RAG2 with RAG1-like proteins during the evolution of V(D)J recombination.

Not available

S-EPMC4840297 | biostudies-literature

Genetic loci that regulate healing and regeneration in LG/J and SM/J mice.

Not available

S-EPMC3652381 | biostudies-literature

Circular RNA and mRNA profiling reveal competing endogenous RNA networks during avian leukosis virus, subgroup J-induced tumorigenesis in chickens.

Not available

S-EPMC6171863 | biostudies-literature