Chu San S - OmicsDI

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Unknown (1607)
Proteomics (14)
Transcriptomics (7)
Metabolomics (2)

Organisms

Homo sapiens (8)
Mus musculus (6)
Rattus norvegicus (2)
Plutella xylostella (1)
Gallus gallus (1)
Arabidopsis thaliana (1)
Fasciola hepatica (1)
Neoseiulus barkeri (1)
Toxoplasma gondii ME49 (1)

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pride (14)
biostudies-arrayexpress (7)
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Cell culture (2)
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Disease

Alzheimer's disease (1)
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Technology Type

Mass Spectrometry (14)
Shotgun proteomics (6)
Gel-based experiment (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Mass spectrometry (1)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative – rp (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive – rp (1)

Publication Date

2023 (4)
2021 (4)
2010 (2)
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2020 (2)
2016 (1)
2015 (1)
2014 (1)
2013 (1)
2007 (1)
2025 (1)
2024 (1)
2019 (1)
2017 (1)

CHEBI ID

CHEBI:15741 (2)
CHEBI:16610 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16899 (2)
CHEBI:17992 (2)
CHEBI:30746 (2)
CHEBI:30794 (2)
CHEBI:7916 (2)
CHEBI:10072 (1)
CHEBI:10333 (1)
CHEBI:10353 (1)
CHEBI:104011 (1)
CHEBI:113543 (1)
CHEBI:116314 (1)
CHEBI:116735 (1)
CHEBI:12936 (1)
CHEBI:12962 (1)
CHEBI:132471 (1)
CHEBI:132830 (1)
CHEBI:132983 (1)
CHEBI:13332 (1)
CHEBI:134763 (1)
CHEBI:137245 (1)
CHEBI:137426 (1)
CHEBI:138528 (1)
CHEBI:139272 (1)
CHEBI:140563 (1)
CHEBI:140773 (1)
CHEBI:143736 (1)

Metabolite Name

Adenine (2)
Uridine (2)
(+)-Pantothenic acid (1)
(3Z)-Hex-3-en-1-ol (1)
(9R,10S)-epoxyheptadecan-4,6-diyn-3-one (1)
(E)-3,4,5-Trimethoxycinnamic acid (1)
(E)-4-Methoxycinnamic acid (1)
(R)-Mevalonic acid (1)
(Z)-methylisoeugenol (1)
-Linolenic acid (1)
1(10)-Aristolen-2-one (1)
1,2,3,6,7-Pentamethoxyxanthone (1)
1,3-Dihydroxy-4,5-dimethoxyxanthone (1)
1,5-Anhydro-D-sorbitol (1)
1,6-Dihydroxy-3,5,7-trimethoxyxanthone (1)
1,7-Dimethoxyxanthone (1)
1-Hydroxy-3,6,7-trimethoxy xanthone (1)
1-Hydroxy-3,7-dimethoxyxanthone (1)
1-Hydroxyacoronene (1)
1-Methylguanine (1)
1-Methylhydantoin (1)
10-Hydroxydecanoic acid (1)
12-Hydroxydodecanoic acid (1)
13-Tetradecenyl acetate (1)
13S-Hydroxyoctadecadienoic acid (1)
2,2-Dimethylsuccinic acid (1)
2,4-Dimethylcinnamic acid (1)
2,4-Quinolinediol (1)
2,6-Dihydroxybenzoic acid (1)
2-Aminobenzoic acid (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (5)
RNA-seq of coding RNA (2)

Release Date

2025 (206)
2022 (198)
2024 (195)
2023 (179)
2021 (167)
2020 (146)
2019 (99)
2018 (81)
2017 (76)
2016 (60)
2015 (51)
2014 (44)
2012 (24)
2013 (19)
2011 (19)
2026 (18)
2010 (10)
2008 (5)
2007 (4)
2009 (3)
2006 (3)
2005 (2)
2003 (2)
2001 (2)
2004 (1)

Lab affiliation

1. Graduate Institute of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan 33302, Taiwan. 2. Molecular Medicine Research Center, Chang Gung University, Taoyuan 33302, Taiwan. 3. Department of Otolaryngology-Head and Neck Surgery, Chang Gung Memorial Hospital, Linkou 33305, Taiwan. 4. Research Center for Food and Cosmetic Safety, College of Human Ecology, Chang Gung University of Science and Technology, Taoyuan 33302, Taiwan. (1)
Centre de Recherche du CHU Ste-Justine (1)
Department of Molecular, Cellular & Biomedical Sciences, University of New Hampshire, Durham, NH 03824, USA Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. (1)
Department of Molecular, Cellular, & Biomedical Sciences, Chu Lab, University of New Hampshire, United States (1)
Graduate Institute of Medical Sciences and Department of Biochemistry and Molecular Cell Biology,School of Medicine, College of Medicine, Taipei Medical University, (1)
Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, China (1)
Laboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC UMR 7178, Strasbourg, France. (1)
Molecular Parasitology Lab (MPL),Orbsen Building, School of Natural Sciences/Ryan Institute National University of Ireland, Galway, Ireland (1)
National Key Discipline Laboratory, Department of Nutrition and Food Hygiene, School of Public Health, Harbin Medical University, Harbin, P. R. China (1)
Shanghai center for plant stress biology, Shanghai institutes for biological sciences, Chinese academy of sciences. (1)
UHC Sainte-Justine, Research Center (1)
University of New Hampshire (1)
University of Pittsburgh (1)
dana farber cancer institute and harvard medical school (1)

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Research on the quality markers of antioxidant activity of Kai-Xin-San based on spectrum-effect relationship

Kai-Xin-San (KXS) is one of the classic famous traditional Chinese medicine prescriptions for amnesia, which has been applied for thousands of years. Modern pharmacological research has found that KXS has significant therapeutic efficacy on nervous system diseases, which is related to its antioxidan...

2023-12-21 | MTBLS8806 | MetaboLights

Identification of ETV6 bound protein by affinity purification of ETV6-HA fusion protein in REH cells

To determine the protein partners of ETV6, we expressed ETV6 and HA-tagged ETV6 in Reh pre-B leukemic cells. Anti-HA magnetic beads were used for affinity purification of ETV6-HA (and ETV6 control) from the nuclear and cytoplasmic fraction. Following purification on-beads digest and LC-MS/MS experim...

ORGANISM(S): Homo sapiens (Human)

2022-01-26 | PXD031001 | Pride

Phosphorylation-Driven Epichaperome Assembly: A Critical Regulator of Cellular Adaptability and Proliferation

The intricate protein-chaperone network is vital for cellular function. Recent discoveries have unveiled the existence of specialized chaperone complexes called epichaperomes, protein assemblies orchestrating the reconfiguration of protein-protein interaction networks, enhancing cellular adaptabilit...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2024-10-17 | PXD050251 | Pride

Hsp90 Posttranslational modifications Epichaperome

An apicomplexan bromodomain, TgBDP1 associates with diverse epigenetic factors to regulate essential transcriptional processes in Toxoplasma gondii.

The protozoan pathogen Toxoplasma gondii relies on tight regulation of gene expression to invade and establish infection in its host. The divergent gene regulatory mechanisms of Toxoplasma and related apicomplexan pathogens rely heavily on regulators of chromatin structure and histone modifications....

ORGANISM(S): Toxoplasma gondii ME49

2023-06-01 | PXD038848 | Pride

Toxoplasma Gondii Transcriptional Bromodomain Apicomplexan Histone Epigenetic Tgbdp1 Acetylation Lc-ms/ms

Gene expression study in hepatocellular carcinoma

Gene expression data from 100 human hepatocellular carcinomas (HCC) were generated and analyzed as part of effort for validating prognostic gene expression signatures from previous studies. Using four different classification algorithms and leave-one-out cross-validation approaches, four different p...

ORGANISM(S): Homo sapiens

2010-07-08 | E-GEOD-16757 | biostudies-arrayexpress

Qu-Du-San-Jie decoction induces growth inhibition and vascular normalization in NF2-associated vestibular schwannoma.

Not available

S-EPMC9437245 | biostudies-literature

Research on the quality markers of antioxidant activity of Kai-Xin-San based on the spectrum-effect relationship.

Not available

S-EPMC10777484 | biostudies-literature

Longitudinal comparison of insulin resistance and dyslipidemia in children with and without perinatal HIV infection in South Africa.

Not available

S-EPMC9883048 | biostudies-literature

A potential patient stratification biomarker for Parkinson´s disease based on LRRK2 kinase-mediated centrosomal alterations in peripheral blood-derived cells.