Clone - OmicsDI

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Transcriptomics (17830)
Unknown (10376)
Genomics (5644)
Proteomics (1381)
Metabolomics (494)
Other (114)
Models (34)
Methylation profiling (25)
Multiomics (14)
Genomic (7)
Clinical (4)

Organisms

Homo sapiens (8117)
Mus musculus (5589)
Arabidopsis thaliana (823)
Saccharomyces cerevisiae (537)
Drosophila melanogaster (524)
Rattus norvegicus (493)
Danio rerio (199)
Caenorhabditis elegans (184)
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Candida albicans (75)
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Streptococcus pneumoniae D39 (56)
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Staphylococcus aureus (51)
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Xenopus laevis (44)
Glycine max (43)
Macaca mulatta (43)
Escherichia coli str. K-12 substr. MG1655 (41)
Hordeum vulgare (38)
Streptomyces coelicolor (36)
Bacillus subtilis (34)
Oryza sativa Japonica Group (34)
Escherichia coli K-12 (33)
Rhizobium leguminosarum (30)

Organisms

Homo sapiens (899)
Mus musculus (654)
Pseudomonas aeruginosa (47)
Staphylococcus aureus (37)
Escherichia coli (26)
Populus tremula x Populus alba (22)
Vitis vinifera (22)
Rattus norvegicus (20)
Plasmodium falciparum (19)
Acinetobacter baumannii (19)
Klebsiella pneumoniae (19)
Hevea brasiliensis (12)
Saccharomyces cerevisiae (12)
Solanum tuberosum (11)
Drosophila melanogaster (11)
Flavobacterium psychrophilum (10)
Danio rerio (10)
Macaca mulatta (8)
Gallus gallus (8)
Vibrio cholerae (7)
Helicobacter pylori (7)
Daphnia magna (7)
Caenorhabditis elegans (7)
Arabidopsis thaliana (7)
Zostera marina (6)
Theobroma cacao (6)
Cricetulus griseus (6)
Triticum aestivum (6)
Sus scrofa (6)
Streptococcus pneumoniae (5)

Repository

biostudies-arrayexpress (18453)
ENA (3485)
geo (906)
EGA (814)
MassIVE (708)
MetaboLights (478)
pride (279)
jPOST (174)
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Cell Collective (19)
PeptideAtlas (18)
EVA (13)
GNPS (13)
FAIRDOMHub (12)
dbGaP (7)
NODE (5)
ExpressionAtlas (3)
BioModels (3)
GPMDB (3)
LINCS (3)
MetabolomicsWorkbench (3)

Tissue

Cell culture (69)
Epithelial cell (26)
T cell (18)
Blood (16)
Brain (15)
Permanent cell line cell (14)
Colon (12)
Blood cell (11)
Lung (9)
Primary cell (9)
B cell (8)
Spleen (7)
Bone marrow (6)
Cell suspension culture (6)
Dendritic cell (6)
Hepatocyte (6)
Liver (6)
Macrophage (6)
Stem cell (6)
Leaf (5)
Plant cell (5)
Skin (5)
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JURKAT cell (4)
Melanocyte (4)
Breast (3)
Embryo (3)
Cells (2)
T-cells (1)
Microorganism (1)

Disease

Normal (92)
Breast cancer (15)
Colon cancer (15)
Prostate cancer (9)
Adenocarcinoma (9)
Colorectal adenocarcinoma (8)
Neuroblastoma (8)
Melanoma (8)
Osteosarcoma (7)
Colorectal carcinoma (6)
Rheumatoid arthritis (5)
Colorectal cancer (5)
Tumor (5)
Breast carcinoma (5)
Chronic myeloid leukemia (5)
Breast adenocarcinoma (4)
Reference (4)
Multiple myeloma (4)
Acute lymphoblastic leukemia (3)
Colon carcinoma (3)
Head and neck squamous cell carcinoma (3)
Chronic myelogenous leukemia (3)
Lung cancer (3)
Control (3)
Wilms tumour (3)
Adenoma (2)
Colorectal Carcinoma (2)
Erythroleukemia (2)
Infiltrating ductal carcinoma (2)
Squamous Cell Carcinoma (2)

Technology Type

Illumina HiSeq 2000 (23)
Illumina HiSeq 2500 (13)
Illumina HiSeq 2500, ILLUMINA (9)
Illumina MiSeq (8)
Illumina HiSeq 2000, ILLUMINA (8)
ILLUMINA, Illumina HiSeq 2500 (3)
Illumina Genome Analyzer II (3)
Illumina MiSeq, ILLUMINA (2)
ILLUMINA, NextSeq 500 (2)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina (2)
ILLUMINA, Low Pass Whole Genome Sequencing (LP-WGS), Illumina NovaSeq 6000, Illumina Genome Analyzer II, SNP array (1)
ION_TORRENT, Ion Torrent PGM (1)
Illumina CytoSNP 12 bead array, nanostring (1)
Illumina Oncoscan Array (1)
ILLUMINA, Illumina HiSeq 2500, NextSeq 500, Nanostring (1)
ILLUMINA, Illumina HiSeq 2500, Ion Torrent PGM, ION_TORRENT (1)
HiSeq X Ten (ILLUMINA), HiSeq X Ten, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000, Illumina MiSeq (1)
NextSeq 500, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 2000, Illumina (1)
OXFORD_NANOPORE, ILLUMINA, MinION, HiSeq X Ten (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
NextSeq 550, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 4000 (1)
ILLUMINA, HiSeq X Ten (1)
ILLUMINA, Illumina HiSeq 4000, Ion Torrent PGM, ION_TORRENT (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
IlluminaHuman HT12, IlluminaHuman AWG-6 and HT12 (1)
Illumina_450K, Illumina_HumanHT-12_V4, ILLUMINA, Illumina HiSeq 2000 (1)

Instrument Platform

Illumina NovaSeq 6000 (679)
NextSeq 500 (312)
Illumina HiSeq 2000 (260)
Illumina HiSeq 2500 (248)
Illumina HiSeq 4000 (204)
NextSeq 550 (99)
NextSeq 2000 (66)
Illumina NovaSeq X (64)
Illumina MiSeq (50)
Axon GenePix 4000B scanning hardware (34)
Illumina Genome Analyzer IIx (31)
BGISEQ-500 (30)
Illumina Genome Analyzer II (24)
NA (24)
N/A (23)
Illumina HiSeq 1500 (23)
DNBSEQ-G400 (21)
GenePix 4000B [Axon Instruments] (19)
Illumina HiSeq 3000 (19)
Axon- GenePix4000B (18)
G2565BA DNA microarray scanner [Agilent] (18)
Scanning hardware (16)
Agilent G2565AA and G2565BA Microarray Scanner (15)
DNA Microarray Scanner BA [Agilent Technologies] (14)
418 [Affymetrix] (14)
AB SOLiD 4 System (13)
GenePix 4000A [Axon Instruments] (12)
Other (12)
Affymetrix Fluidics Station 400 (12)
ScanArray 4000 [PerkinElmer] (10)

Publication Date

2013 (2196)
2014 (2072)
2010 (2021)
2012 (1907)
2015 (1852)
2011 (1677)
2008 (1451)
2016 (1250)
2009 (888)
2025 (623)
2026 (570)
2007 (555)
2022 (547)
2024 (519)
2021 (475)
2023 (472)
2020 (409)
2019 (333)
2018 (300)
2017 (283)
2006 (272)
2005 (266)
2004 (130)
2003 (32)
2002 (8)
2001 (1)
2027 (1)

UNIPROT ID/AC

ACTG_HUMAN (51)
ADT1_HUMAN (51)
ADT2_HUMAN (51)
ALDOC_HUMAN (51)
ANM1_HUMAN (51)
APMAP_HUMAN (51)
ARF5_HUMAN (51)
BAG6_HUMAN (51)
BIP_HUMAN (51)
BTF3_HUMAN (51)
C1TC_HUMAN (51)
FAS_HUMAN (51)
FINC_HUMAN (51)
IPO4_HUMAN (51)
KINH_HUMAN (51)
LACTB_HUMAN (51)
LRC40_HUMAN (51)
MIC60_HUMAN (51)
MK14_HUMAN (51)
PABP1_HUMAN (51)
PEPL_HUMAN (51)
PFKAL_HUMAN (51)
PLAK_HUMAN (51)
PRDX3_HUMAN (51)
PSMD4_HUMAN (51)
PYRG1_HUMAN (51)
QCR2_HUMAN (51)
RBM10_HUMAN (51)
RBM4_HUMAN (51)
SAR1A_HUMAN (51)

ENSEMBL ID

ENSDARG00000000103 (16)
ENSDARG00000001431 (16)
ENSDARG00000001915 (16)
ENSDARG00000001950 (16)
ENSDARG00000001993 (16)
ENSDARG00000002480 (16)
ENSDARG00000005039 (16)
ENSDARG00000005560 (16)
ENSDARG00000005791 (16)
ENSDARG00000006399 (16)
ENSDARG00000007219 (16)
ENSDARG00000009285 (16)
ENSDARG00000009484 (16)
ENSDARG00000010149 (16)
ENSDARG00000010478 (16)
ENSDARG00000013078 (16)
ENSDARG00000016301 (16)
ENSDARG00000016393 (16)
ENSDARG00000017014 (16)
ENSDARG00000017624 (16)
ENSDARG00000018404 (16)
ENSDARG00000020008 (16)
ENSDARG00000021124 (16)
ENSDARG00000022767 (16)
ENSDARG00000023323 (16)
ENSDARG00000024746 (16)
ENSDARG00000025012 (16)
ENSDARG00000025301 (16)
ENSDARG00000025350 (16)
ENSDARG00000025635 (16)

CHEBI ID

CHEBI:15428 (83)
CHEBI:30769 (82)
CHEBI:15741 (73)
CHEBI:28044 (65)
CHEBI:16335 (64)
CHEBI:15891 (63)
CHEBI:16704 (63)
CHEBI:6650 (62)
CHEBI:17596 (60)
CHEBI:25017 (59)
CHEBI:30915 (59)
CHEBI:16449 (58)
CHEBI:18012 (58)
CHEBI:27897 (58)
CHEBI:17368 (57)
CHEBI:16811 (57)
CHEBI:27266 (56)
CHEBI:17568 (55)
CHEBI:15354 (55)
CHEBI:28300 (54)
CHEBI:16737 (54)
CHEBI:18237 (54)
CHEBI:18186 (54)
CHEBI:16708 (54)
CHEBI:32816 (53)
CHEBI:16919 (53)
CHEBI:17822 (53)
CHEBI:16027 (53)
CHEBI:22660 (52)
CHEBI:16750 (52)

Metabolite Name

Creatinine (65)
Creatine (64)
L-Tyrosine (64)
Adenosine (64)
Hypoxanthine (63)
Uridine (61)
Inosine (60)
Guanine (58)
Uracil (57)
L-Phenylalanine (57)
Choline (56)
Xanthine (56)
Taurine (55)
Adenine (55)
Glycine (52)
Uric acid (51)
Succinic acid (51)
Guanosine (51)
L-Tryptophan (49)
Citric acid (49)
Pantothenic acid (48)
Cytosine (47)
Thymine (47)
Thymidine (47)
Riboflavin (45)
Ornithine (44)
Cytidine (44)
Betaine (44)
Spermidine (43)
Valine (41)

First Public Date

2014 (453)
2024 (348)
2025 (318)
2023 (290)
2026 (283)
2021 (268)
2020 (259)
2022 (238)
2013 (206)
2019 (204)
2017 (161)
2018 (157)
2016 (145)
2015 (119)
2012 (17)
2010 (10)
2011 (9)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Study status

Enrolling by invitation (1)
Terminated (1)
Not provided (1)
Not yet recruiting (1)

Lab affiliation

University of Oxford (9)
Immunology Research Center, National Health Research Institutes, Zhunan, Taiwan Department of Pathology & Immunology, Baylor College of Medicine, Houston, Texas (4)
Head of the Curie Institute Mass Spectrometry Platform (3)
Massachusetts Institute of Technology (3)
Moffitt Cancer Center Tampa, FL, USA (3)
Army Medical University (Third Military Medical University) (2)
CECAD, University of Cologne (2)
Department of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo (2)
Department of Immunology, Interfaculty Institute for Cell Biology, Eberhard Karls University Tübingen (2)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (2)
Dept. Oncology-Pathology, Scilifelab, Karolinska Institutet, Sweden (2)
Director, Proteome Center Rostock, University of Rostock, Germany (2)
EDyP (2)
Indian Institute of Science Bengaluru (2)
KU Leuven - Department of Oncology - Laboratory for Disease Mechanisms in Cancer (2)
University of Virginia (2)
-Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht -Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht 3584 CH, Netherlands. -Netherlands Proteomics Center, Padualaan 8, Utrecht 3584 CH, Netherlands. (1)
1. Department I of Internal Medicine, Center for Integrated Oncology (CIO), Aachen-Bonn- Cologne-Duesseldorf, Excellence Cluster for Cellular Stress Response and Aging-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), University of Cologne (UoC), 50937 Cologne, Germany 2. Department of Hematology and Cellular Therapy, University of Leipzig, Leipzig, Germany (1)
1. Istitituto Sperimentale Italiano L. Spallanzani,Milano, Italy; 2. Dipartimento di Scienze Veterinarie e Sanità Pubblica, Università degli Studi di Milano, Milano, Italy. (1)
1Departments of Medicine & 2Pathology, Case Western Reserve University and University Hospitals Case Medical Center; 3Department of Molecular Biology & Microbiology Case Western Reserve University School of Medicine, Cleveland, Ohio 44106,USA. (1)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
Aarhus University (1)
Affiliated hospital of Nantong university (1)
Agriculture and Agri-Food Canada (1)
Allakos Inc. (1)
Assistant Professor, Gene Expression & Regulation Program, Wistar Institute Cancer Center, Philadelphia PA, USA (1)
Assistant Professor, Pediatrics-Heme/Onc and Bone Marrow Transplantation (1)
Associate Professor Bioinformatics, UCD School of Medicine, Conway Institute, Systems Biology Ireland, University College Dublin. (1)
Associate Professor of Medicine, Division of Infectious Diseases, Department of Medicine, Washington Univerisity in St Louis (1)
B CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, Tatzberg 41, 01307 Dresden, Germany (1)

Keyword

Rechallenge (1)
RAS mutations (1)
Low-RAS (1)
CAMPTO*5F 100MG/5ML (1)
FIRE (1)
Anti-EGFR therapy (1)
ERBITUX*INFUS 1FL 50ML 2MG/ML (1)
Lithium Carbonate (1)
Chemopreventive therapy (1)
Adenoma development (1)
Circulating tumor DNA (1)
Biomarker (1)
Folic Acid (1)
MCRC (1)
Panitumumab (1)
Irinotecan (1)
Leucovorin (1)
Levoleucovorin (1)

IsPrivate

False (3)

Classification

bacteria (286)
protozoa (51)
viruses (23)
fungi (4)
helminths (1)

Modification

Not available (2)
15.99491 (1)
15.994915 (1)
42.010565 (1)
57.02146 (1)
57.021464 (1)
ITRAQ4plex-117 (1)
MTRAQ heavy (1)

Study type

Transcription profiling by array (11711)
RNA-seq of coding RNA (2082)
ChIP-seq (986)
Comparative genomic hybridization by array (582)
RNA-seq of coding RNA from single cells (546)
Unknown experiment type (331)
ChIP-chip by tiling array (284)
Methylation profiling by array (229)
Other (226)
RNA-seq of non coding RNA (205)
ChIP-chip by array (147)
Methylation profiling by high throughput sequencing (124)
Genotyping by array (97)
DNA-seq (88)
Transcription profiling by tiling array (79)
RNA-seq of total RNA (75)
RNAi profiling by array (55)
Cell line - High-throughput sequencing (50)
MicroRNA profiling by array (41)
ATAC-seq (36)
Animal - High-throughput sequencing (34)
Transcription profiling by RT-PCR (34)
Single nucleus RNA sequencing (33)
Transcription profiling by SAGE (24)
ScATAC-seq (20)
Human - High-throughput sequencing (18)
RIP-seq (18)
Proteomic profiling by array (18)
High-throughput sequencing (17)
Animal - Single-cell sequencing (13)

Release Date

2013 (2507)
2014 (2426)
2010 (2241)
2012 (2223)
2015 (2220)
2011 (1941)
2008 (1658)
2016 (1656)
2022 (1176)
2009 (1096)
2021 (1033)
2023 (973)
2025 (907)
2020 (863)
2024 (764)
2007 (729)
2019 (713)
2018 (675)
2017 (657)
2006 (450)
2005 (414)
2026 (387)
2004 (281)
2003 (153)
2002 (150)
1999 (128)
1998 (127)
2000 (121)
2001 (108)
1997 (35)

Location

Germany (1)
Netherlands (1)
Italy (1)

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HL-60 clone 15 differentiation LC-MS

As eosinophils are the densest and lowest abundant leukocytes, their isolation is cost-and labor intense. This sets restrictions on many aspects of eosinophilic research. Eosinophilic cell lines are available for use; however they are not characterized in much detail, yet. Cells of the HL-60 clone 1...

ORGANISM(S): Homo sapiens (Human)

2025-05-08 | PXD057747 | Pride

Aureococcus anophagefferens strain:clone 1984

Aureococcus anophagefferens clone 1984 genome sequencing

PRJNA337548 | ENA

Escherichia coli str. 'clone D i2'

Escherichia coli str. 'clone D i2' genome sequencing

PRJNA52021 | ENA

Escherichia coli str. 'clone D i14'

Escherichia coli str. 'clone D i14' genome sequencing

PRJNA52023 | ENA

Clone C

Pseudomonas aeruginosa Clone C complete genome

PRJEB5222 | ENA

Entamoeba histolytica strain:HM1:IMSS clone 6

Entamoeba histolytica HM-1:IMSS Clone-6 Genome Project

PRJDB4673 | ENA

Isolation of a Novel Rat Neural Progenitor Clone that Expresses Dlx Family Transcription Factors and Gives Rise to Functional GABAergic Neurons in Culture

GABAergic interneurons are lost in conditions including epilepsy and CNS injury, but there are few culture models available to study their function. Towards the goal of obtaining renewable sources of GABAergic neurons, we used the molecular profile of a functionally-incomplete GABAergic precursor c...

ORGANISM(S): Rattus norvegicus

2011-11-09 | E-GEOD-31635 | biostudies-arrayexpress

Human HAK-1A hepatocellular carcinoma (HCC) cells: TCF-4J-overexpressing clone (under normoxia) vs. TCF-4K-overexpressing clone (under normoxia)

The microarray gene expression analysis revealed that TCF-4 isoforms activate different downstream target genes in HCC. TCF-4J upregulated genes associated with Wnt/beta-catenin, Notch, and insulin/IGF-1/IRS1 signal transduction pathway. 1 HAK-1A HCC clone overexpressing TCF-4J, 1 HAK-1A HCC clone o...

ORGANISM(S): Homo sapiens

2013-11-01 | E-GEOD-42512 | biostudies-arrayexpress

RNA-Seq of Metastatic Clone versus Non-Metastatic Clone in Sarcoma

PRJNA485780 | ENA

Pseudomonas aeruginosa clone ST235

Genome sequencing and comparison of representatives of Pseudomonas aeruginosa clone ST235 strains

PRJEB40495 | ENA

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35972 Results

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