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ProteomicsTime-resolved inducible knock-down of Clp protease subunits in tobacco identifies putative protease substrates
The Clp protease complex in plants is the one with the highest complexity through all life kingdoms. It is composed of 14 nuclear- and plastid-encoded subunits which are allocated in different rings across the complex. The proteolytic ring (P-ring; ClpP3-ClpP6) and non-proteolytic ring (R-ring; ClpR...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-02-22 | PXD008305 | Pride
Clp protease  chloroplast  protein degradation  protease substrate  nicotiana tabacum  inducible rnai  lc-msms  shotgun proteomics 
ProteomicsFunction of clpF in the clp protease complex
The plant plastid Clp machinery comprises a hetero-oligomeric ClpPRT proteolytic core, ATP-dependent ClpC,D chaperones and an adaptor protein, ClpS1. ClpS1 directs a subset of substrates to the Clp protease-chaperone complex for degradation, but substrate recognition and delivery mechanisms are unkn...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-04-09 | PXD002186 | Pride
Lc-msms Plant cell Arabidopsis thaliana Coip Clp complex Chloroplast Stroma 
ProteomicsMablango_ClpP_HYTANE_P124_Lumos
This dataset consists of 6 raw MS files, acquired on Thermo Fusion Lumos mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by Keith Wong. Sample processing and mass spectrometry acquisition was performed by Cassandra Wong. Data analysis was performed by Cassandra...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-06-13 | MSV000089642 | MassIVE
TranscriptomicsReaeration timecourse from a defined hypoxia model
Reaeration timecourse from a defined hypoxia model in Mycobacterium tuberculosis. The mechanism by which mycobacteria return to a replicating state upon re-exposure to favorable conditions is not well understood. In this study, we utilized reaeration from a defined hypoxia model to characterize the...
ORGANISM(S): Mycobacterium tuberculosis 
2010-07-28 | E-GEOD-21590 | biostudies-arrayexpress
UnknownPfClpC Is an Essential Clp Chaperone Required for Plastid Integrity and Clp Protease Stability in Plasmodium falciparum.
Not available
S-EPMC5726808 | biostudies-literature
UnknownStructure and function of a novel type of ATP-dependent Clp protease.
Not available
S-EPMC2679453 | biostudies-literature
UnknownInterference with Clp protease impairs carotenoid accumulation during tomato fruit ripening.
Not available
S-EPMC5888976 | biostudies-literature
UnknownThe essential M. tuberculosis Clp protease is functionally asymmetric in vivo.
Not available
S-EPMC9067928 | biostudies-literature
TranscriptomicsThe Mycobacterium tuberculosis Clp Gene Regulator is Required for in vitro Reactivation from Hypoxia-induced Dormancy
The isogenic Mtb:ΔRv2745c mutant is significantly more sensitive normoxia conditions after a period of hypoxia, relative to wild-type Mtb, implicating a role for ClgR in response to reactivation, in vivo. Both hypoxia and reaeration treatment led to dysregulation of the σH regulon in the isogenic mu...
ORGANISM(S): Mycobacterium tuberculosis CDC1551 
2014-12-12 | E-GEOD-64065 | biostudies-arrayexpress
UnknownStructure, function, and substrates of Clp AAA+ protease systems in cyanobacteria, plastids, and apicoplasts: A comparative analysis.
Not available
S-EPMC7966870 | biostudies-literature
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