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ProteomicsMass spectrometry runs and analysis of host proteins co-immunoprecipitated with RABV M protein
To explore the role of the matrix protein in RABV infection of host cells, we looked for host proteins that interact with the RABV M protein. We performed Flag-tag-based immunoprecipitation of lysates of HEK293T cells transfected with plasmids expressing either N- or C-terminally Flag-tagged M prote...
ORGANISM(S): Homo sapiens (Human) 
2021-09-09 | PXD021039 | Pride
Matrix protein Co-immunoprecipitation Host proteins Rabv Mass spectrometry 
UnknownProteomics Analysis of Cellular Proteins Co-Immunoprecipitated with Nucleoprotein of Influenza A Virus (H7N9).
Not available
S-EPMC4661793 | biostudies-literature
ProteomicsIdentification of Bacillus subtilis TerC proteins MeeF and MeeY Co-immunoprecipitated proteins
Proteins co-immunoprecipitated with C-terminal FLAG-tagged MeeF or MeeY
ORGANISM(S): Bacillus subtilis subsp. subtilis str. L170 
2023-09-26 | PXD044879 | Pride
Manganese Bacillus subtilis Co-ip Terc Meey Meef 
TranscriptomicsiCLIP and NGS to map protein-RNA interactions for U1-snRNP proteins in Trypanosoma brucei
Individual-nucleotide resolution UV-crosslinking and immunoprecipitation (iCLIP) combined with high-throughput sequencing was performed to generate genome-wide binding maps of two U1-snRNP proteins: U1C and U1-70K in Trypanosoma brucei. 3 (2) biological replicates of U1C (U1-70K) -specific co-immuno...
ORGANISM(S): Trypanosoma brucei 
2014-05-16 | E-GEOD-43848 | biostudies-arrayexpress
TranscriptomicsRoles and Programming of Arabidopsis ARGONAUTE Proteins During Turnip Mosaic Virus Infection
AGO protein immunoprecipitation was combined with high-throughput sequencing of associated small RNAs. AGO2, AGO10, and to a lesser extent AGO1 were shown to associate with siRNAs derived from silencing suppressor (HC-Pro)-deficient TuMV-AS9, but not with siRNAs derived from wild-type TuMV. Co-immun...
ORGANISM(S): Arabidopsis thaliana 
2015-04-06 | E-GEOD-64911 | biostudies-arrayexpress
TranscriptomicsKinesin-associated RNA: RNA co-immunoprecipitated with Kinesin IP vs RNA from Aplysia CNS
Whole genome transcriptional profiling is used to identify ESTs found in RNA co-immunoprecipitated from Aplysia CNS with antibodies against Aplysia Kinesin Heavy Chain (ApKHC) RNA derived from Aplysia CNS served as control in the opposite channel. Custom Aplysia EST array to probe the samples was de...
ORGANISM(S): Aplysia californica 
2013-04-26 | E-GEOD-30386 | biostudies-arrayexpress
Proteomicsidentification of ECE1-interacting proteins
LN229 cells were subjected to Co-IP using IgG and anti-ECE1 antibodies. The immunoprecipitated complexes were validated by Western blot and subsequently analyzed by liquid chromatography–mass spectrometry (HPLC-MS/MS, QLBio, China) for identification of ECE1-interacting proteins.
ORGANISM(S): Homo sapiens (Human) 
2026-04-27 | PXD071913 | Pride
Ece1 
TranscriptomicsIdentification of RNA molecules associated with the RNA-chaperone Hfq
We used high-throughput methods to discover the Salmonella RNAs that are targeted by the bacterial Sm-like protein, Hfq. Our generic approach, using chromosomal epitope tagging and coIP-on-chip will also be useful to identify the post-transcriptional regulons of many other RNA-binding proteins. Key...
ORGANISM(S): Salmonella enterica 
2010-06-20 | E-GEOD-10149 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation profiling of human HEK293 cells transiantly transfected with plasmids coding for Staufen2-HA isoforms
In human cells, Staufen2 is a double-stranded RNA-binding protein involved in several cellular functions. Although 51% identical to Staufen1, these proteins are nevertheless found in different RNA particles. In addition, differential splicing events generate Staufen2 isoforms that only differ at the...
ORGANISM(S): Homo sapiens 
2008-06-16 | E-GEOD-8437 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Zea mays chloroplast extracts using antibodies raised against OE17 and OE23 chloroplast targeted proteins
OE17 and OE23 are chloroplast targeted proteins. RNA co-immunoprecipitation was performed using antibodies raised against these proteins. RNA from the pellet and from the supernatent for each pulldown was labeled with different fluoro-dyes.
ORGANISM(S): Zea mays 
2006-09-01 | E-MEXP-784 | biostudies-arrayexpress
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