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ProteomicsSpecies identification of ancient Lithuanian fish remains using collagen fingerprinting
Morphological identification of ancient bone is often problematic due to heavy fragmentation that generally influences zooarchaeological assemblages. Fish bones are more taphonomically sensitive than those of other vertebrates as they are typically smaller and less biomineralised. Thus, taxonomic id...
ORGANISM(S): Salmo trutta fario Scophthalmus maximus Sander lucioperca Scophthalmus rhombus Salmo trutta trutta Gadus morhua (Atlantic cod) Esox lucius Salmo salar (Atlantic salmon) Silurus glanis Carassius carassius 
2018-08-29 | PXD010041 | Pride
Zooarchaeology Zooms Ichthyoarchaeology Species identification Neolithic Collagen fingerprinting Fish bone 
ProteomicsMass spectrometric analysis of Collagen alpha-1 (II) chain from Capra hircus
Expressional alterations and post translational modifications (PTM) of type II collagen can be major cause behind osteo and rheumatoid arthritis. PTM of type II collagen α1 chain (COL2A1) such as hydroxylation of proline (P), lysine and glycosylation of hydroxylysine can act as epitopes resulting CO...
ORGANISM(S): Capra hircus (Goat) 
2019-05-06 | PXD012911 | Pride
Capra hircus Collagen alpha-i (ii) Post translational modifications Hydroxyproline mapping 
ProteomicsMass spectrometric analysis of Collagen alpha-1 (II) chain from Capra hircus
Expressional alterations and post translational modifications (PTM) of type II collagen can be major cause behind osteo and rheumatoid arthritis. PTM of type II collagen α1 chain (COL2A1) such as hydroxylation of proline (P), lysine and glycosylation of hydroxylysine can act as epitopes resulting CO...
ORGANISM(S): Capra hircus (Goat) 
2019-05-06 | PXD012928 | Pride
Capra hircus Collagen alpha-i (ii) Post translational modifications Hydroxyproline mapping 
ProteomicsEnhancing ZooMS applications with MALDI-FTICR mass spectrometry on Pleistocene material showing variable collagen preservation
Advances in high-throughput molecular analyses of collagen peptides, especially ZooMS (Zooarchaeology by Mass Spectrometry), have addressed the issue of intense skeletal fragmentation at Palaeolithic archaeological sites, which hinders morphological identification. However, the challenge of variable...
ORGANISM(S): Bos taurus (Bovine) Rangifer tarandus (Reindeer) (Cervus tarandus) 
2025-03-17 | PXD056898 | Pride
Lc-msms Paleoproteomics Prm Casi Zooms Maldi-ms Collagen 
ProteomicsImpact of therapeutic and synchrotron x-rays on collagen I
Biological tissues are exposed to X-rays under controlled conditions in both medical applications (diagnostic imaging and radiotherapy) and research studies (e.g. microcomputed X-ray tomography: microCT). Radiotherapy regimes may deliver doses of up to 50Gy to both the target tumour and to healthy t...
ORGANISM(S): Rattus norvegicus (Rat) 
2025-03-11 | PXD050690 | Pride
Synchrotron Radiation therapy Collagen Computed tomography 
ProteomicsImpact of therapeutic and synchrotron x-rays on collagen I
Biological tissues are exposed to X-rays under controlled conditions in both medical applications (diagnostic imaging and radiotherapy) and research studies (e.g. microcomputed X-ray tomography: microCT). Radiotherapy regimes may deliver doses of up to 50Gy to both the target tumour and to healthy t...
ORGANISM(S): Rattus norvegicus (Rat) 
2025-03-11 | PXD050689 | Pride
Synchrotron Radiation therapy Collagen Computed tomography 
ProteomicsImpact of therapeutic and synchrotron x-rays on collagen I
Biological tissues are exposed to X-rays under controlled conditions in both medical applications (diagnostic imaging and radiotherapy) and research studies (e.g. microcomputed X-ray tomography: microCT). Radiotherapy regimes may deliver doses of up to 50Gy to both the target tumour and to healthy t...
ORGANISM(S): Rattus norvegicus (Rat) 
2025-03-11 | PXD050686 | Pride
Synchrotron Radiation therapy Collagen Computed tomography 
ProteomicsImpact of therapeutic and synchrotron x-rays on collagen I
Biological tissues are exposed to X-rays under controlled conditions in both medical applications (diagnostic imaging and radiotherapy) and research studies (e.g. microcomputed X-ray tomography: microCT). Radiotherapy regimes may deliver doses of up to 50Gy to both the target tumour and to healthy t...
ORGANISM(S): Gallus gallus (Chicken) 
2025-03-11 | PXD050691 | Pride
Collagen Synchrotron imaging Tendon Computed tomography Therapeutic radiation 
ProteomicsBone collagen from African Bovids for species identification using Zooarchaeology by Mass Spectrometry (ZooMS)
The dataset is for identification of MALDI markers for peptide mass fingerprinting of bone collagen for species identification using ZooMS The dataset contatins: - raw files - peak list files - results files for searches against BOVIN proteome and bovine collagen sequences - database for the bovine...
ORGANISM(S): Bovidae (ncbitaxon:9895) 
2020-08-09 | MSV000085936 | MassIVE
ProteomicsBone collagen from Australian marsupials for ZooMS peptide markers
This dataset was used for the identification of ZooMS markers for peptide mass fingerprinting of bone collagen. The dataset includes: raw files, peak list files, result files, and the databases used for the searches. A metadata file is included with information about the sample numbers.
ORGANISM(S): Macropus Fuliginosus (ncbitaxon:9316) Wallabia Bicolor (ncbitaxon:9330) Isoodon Macrourus (ncbitaxon:37698) Macropus Giganteus (ncbitaxon:9317) Notamacropus Parma (ncbitaxon:413582) Perameles Nasuta (ncbitaxon:9344) Tachyglossus Aculeatus (ncbitaxon:9261) Notamacropus Eugenii (ncbitaxon:9315) Petaurus Breviceps (ncbitaxon:34899) Phascolarctos Cinereus (ncbitaxon:38626) Lagorchestes Conspicillatus (ncbitaxon:65624) Phascogale Tapoatafa (ncbitaxon:9293) Osphranter Rufus (ncbitaxon:9321) Lagostrophus Fasciatus (ncbitaxon:65634) Notamacropus Agilis (ncbitaxon:9313) Pseudocheirus Peregrinus (ncbitaxon:9333) Notamacropus Irma (ncbitaxon:196387) Thylacinus Cynocephalus (ncbitaxon:9275) Osphranter Robustus (ncbitaxon:9319) Trichosurus Vulpecula (ncbitaxon:9337) Lasiorhinus (ncbitaxon:30666) Vombatus Ursinus (ncbitaxon:29139) Sarcophilus Harrisii (ncbitaxon:9305) Notamacropus Rufogriseus (ncbitaxon:1960652) 
2021-07-05 | MSV000087755 | MassIVE
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