Corpus - OmicsDI

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Unknown (5840)
Transcriptomics (1564)
Genomics (987)
Proteomics (140)
Metabolomics (34)
Clinical (20)
Other (15)
Methylation profiling (5)
Genomic (3)
Models (2)

Organisms

Mus musculus (766)
Homo sapiens (620)
Rattus norvegicus (139)
Bos taurus (79)
Macaca mulatta (30)
Sus scrofa (24)
Danio rerio (12)
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Drosophila melanogaster (9)
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Mesocricetus auratus (6)
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Schizophyllum commune (2)
Pimephales promelas (2)
Papio anubis (2)
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Xenopus laevis (2)
Oryctolagus cuniculus (2)
Caenorhabditis elegans (2)
Mammalia (1)

Organisms

Mus musculus (199)
Homo sapiens (80)
Bos taurus (39)
pond metagenome (29)
Vibrio parahaemolyticus (15)
Rattus norvegicus (12)
Macaca mulatta (8)
Drosophila melanogaster (4)
Sus scrofa (4)
Bos indicus (3)
Bubalus bubalis (3)
Helicobacter pylori (3)
Canis lupus familiaris (3)
Macaca radiata (3)
Vibrionaceae (2)
Lutjanus campechanus (2)
Bos grunniens (2)
Sciaenops ocellatus (2)
Equus caballus (2)
Serratia marcescens (2)
Zea mays (2)
human gut metagenome (2)
marine metagenome (2)
unidentified (2)
marine sediment metagenome (2)
Bagre marinus (1)
Lutjanus vivanus (1)
Carcharhinus limbatus (1)
Lutjanus (1)
Penicillium sp. SPG-F1 (1)

Repository

biostudies-arrayexpress (1395)
ENA (785)
geo (289)
EGA (82)
MassIVE (72)
pride (43)
MetaboLights (29)
iProX (11)
ExpressionAtlas (9)
PAXDB (7)
jPOST (5)
NODE (5)
GPMDB (4)
dbGaP (3)
MetabolomicsWorkbench (3)
PeptideAtlas (3)
BioModels (2)
GNPS (2)
PanoramaPublic (2)
EVA (1)

Tissue

Cerebellum (6)
Corpus callosum (6)
Stomach (5)
Caecum (4)
Colon (4)
Pituitary gland (4)
Uterus (4)
Spleen (4)
Brainstem (4)
Epididymis (4)
Cerebral cortex (4)
Liver (4)
Corpus striatum (4)
Tonsil (3)
Duodenum (3)
Mammary gland (3)
Cortex of kidney (3)
Ovary (3)
Hippocampus (3)
Lung (3)
Heart (3)
Testis (3)
Dorsal plus ventral thalamus (3)
Placenta (3)
Tongue (2)
Cardiac ventricle (2)
Small intestine (2)
Thymus (2)
Mesenteric lymph node (2)
Hippocampal formation (2)

Disease

Normal (13)
Rheumatoid arthritis (2)
Uterine fibroid (2)
Ovarian disease (2)
Schizophrenia (2)
Adenocarcinoma (1)
Adenomyosis (1)
Neuromuscular pain (1)
Endometriosis (1)
Parkinson's disease (1)
Prostate cancer (1)
Breast cancer (1)
Hepatocellular carcinoma (1)
Melanoma (1)
Benign prostatic hyperplasia (1)
Endometrioid carcinoma (1)
Cocaine addiction (1)
Primary medulloblastoma (1)
Not applicable (1)
Infected (1)
Triple negative breast cancer (1)
Chronic granulomatous disease (1)
IRAK-4 Q293X mutation (1)
Not yet visible (1)
Spinocerebellar ataxia type 1 (1)
Normal (1)
Uterine Fibroid (1)
Temporal lobe epilepsy (1)
S enteritidis (1)
None (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (21)
Mass spectrometry (16)
Bottom-up proteomics (12)
Mass spectrometry assay (11)
Data-dependent acquisition (6)
ESI (3)
Data-independent acquisition (3)
NMR spectroscopy (2)
All-ion fragmentation (2)
SWATH MS (2)
Gel-based experiment (2)
HiSeq X Ten (1)
Illumina MiSeq, Illumina Genome Analyzer IIx (1)
AB SOLiD System 3.0 (1)
Illumina, Illumina 300 Duo V2 - Bead Studio (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
MSE (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (37)
Illumina NovaSeq 6000 (27)
Illumina HiSeq 4000 (17)
NextSeq 500 (13)
Illumina HiSeq 2000 (10)
NextSeq 2000 (7)
NextSeq 550 (4)
2100 Bioanalyzer Agilent (3)
Illumina Genome Analyzer IIx (3)
Illumina Genome Analyzer II (3)
Scanning hardware (3)
Chromium 10x (2)
BeadBug Benchtop homogenizer (2)
Complete Genomics (2)
Intel Core 2 Duo E8500 3.16 GHz or equivalent (2)
Illumina HiScanSQ (2)
GenePix Personal 4100A [Axon Instruments] (2)
GenePix 4000A [Axon Instruments] (2)
418 [Affymetrix] (2)
Illumina NovaSeq X (2)
N/A (2)
UC Irvine HPC (1)
Bioanalyzer, Nanodrop, (1)
Hisat2 v2.0.5 (1)
DESeq (1)
Growthroom (1)
Illumina Novaseq platform (1)
5-Laser BD FACSAria III (1)
Qubit 4.0 and TapeStation (1)
Element AVITI (1)

Publication Date

2014 (192)
2013 (172)
2015 (163)
2012 (153)
2010 (142)
2016 (133)
2011 (123)
2008 (92)
2025 (77)
2009 (75)
2023 (64)
2024 (62)
2022 (60)
2019 (58)
2007 (58)
2026 (55)
2021 (50)
2020 (45)
2017 (36)
2018 (24)
2006 (10)
2005 (6)
2004 (6)
2003 (2)

UNIPROT ID/AC

ZN281_MOUSE (3)
MED10_MOUSE (3)
NDF1_MOUSE (3)
Q5SW46_MOUSE (3)
ING3_MOUSE (3)
Q9D6D0_MOUSE (3)
PLD3A_MOUSE (3)
CXB1_MOUSE (3)
RIMS4_MOUSE (3)
LRC61_MOUSE (3)
LAMP5_MOUSE (3)
NRBF2_MOUSE (3)
RNF37_MOUSE (3)
FKB1B_MOUSE (3)
TLC3B_MOUSE (3)
NMDZ1_MOUSE (3)
FAIM1_MOUSE (3)
CBLN1_MOUSE (3)
P22888 (1)
P01229 (1)
P09529 (1)
P08476 (1)
P30968 (1)
P01148 (1)
P23945 (1)
P01215 (1)
P07994 (1)
P04837 (1)
P01217 (1)
Q0VBW7 (1)

ENSEMBL ID

ENSG00000170477 (2)

CHEBI ID

CHEBI:16704 (6)
CHEBI:17562 (5)
CHEBI:30769 (5)
CHEBI:17268 (4)
CHEBI:37024 (4)
CHEBI:16919 (4)
CHEBI:17295 (4)
CHEBI:17596 (4)
CHEBI:17368 (4)
CHEBI:15553 (3)
CHEBI:16691 (3)
CHEBI:15901 (3)
CHEBI:35704 (3)
CHEBI:17713 (3)
CHEBI:16450 (3)
CHEBI:16264 (3)
CHEBI:17202 (3)
CHEBI:17802 (3)
CHEBI:17533 (3)
CHEBI:16708 (3)
CHEBI:17752 (3)
CHEBI:16750 (3)
CHEBI:15428 (3)
CHEBI:6650 (3)
CHEBI:17026 (2)
CHEBI:59229 (1)
CHEBI:63533 (1)
CHEBI:23965 (1)
CHEBI:7872 (1)
CHEBI:16469 (1)

Metabolite Name

L-Proline (5)
Spermidine (5)
Cytosine (5)
L-Leucine (5)
Creatine (4)
Corticosterone (4)
Betaine (4)
Deoxyuridine (4)
L-Arginine (4)
L-Histidine (4)
Choline (4)
Adenosine (4)
L-Glutamine (4)
Cytidine (4)
Uridine (4)
Creatinine (4)
L-Phenylalanine (4)
Inosine (4)
Hypoxanthine (4)
1-Amino-1-deoxy-scyllo-inositol 4-phosphate (3)
N6,N6,N6-Trimethyl-L-lysine (3)
Hypotaurine (3)
L-Cystine (3)
Ketoleucine (3)
AMP (3)
Uracil (3)
L-phenylalanine (3)
Niacinamide (3)
Lumichrome (3)
L-Lysine (3)

First Public Date

2024 (257)
2020 (69)
2025 (58)
2023 (58)
2014 (57)
2026 (49)
2019 (47)
2022 (46)
2021 (40)
2016 (37)
2017 (26)
2015 (16)
2018 (15)
2013 (8)
2011 (2)

Modelling Approach

Ordinary differential equation model (2)

Study status

Recruiting (9)
Completed (6)
Active, not recruiting (2)
Not yet recruiting (2)
Terminated (1)

Lab affiliation

Ludwig-Maximiliam-University of Munich (2)
Professor of Medicine Professor of Pathology, Microbiology and Immunology Vanderbilt University School of Medicine (1)
Fondazione Pisana per la Scienza ONLUS, 56107 San Giuliano Terme, Pisa, Italy Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands (1)
Thomas Fröhlich, Laboratory for Functional Genome Analysis LAFUGA, Gene Center, LMU München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany (1)
CANCER MOLECULAR PATHOLOGY AND THERAPEUTIC TARGETS. HOSPITAL LA PAZ INSTITUTE FOR HEALTH RESEARCH. MADRID. SPAIN. (1)
Laboratory of Experimental Hematology, Vaccine and Infectious Disease Institute (Vaxinfectio), University of Antwerp, 2610 Wilrijk, Belgium (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
DZNE - German Center for Neurodegenerative Diseases Munich, Neuroproteomics, Feodor-Lynen Str. 17, D-81377 Munich, Germany (1)
Charité Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW1 1AT, UK The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany (1)
Center for Neuroscience Research Children's National Medical Center 111 Michigan Avenue N.W., M7631 Washington, DC 20010-2970 Phone: +1-202-476-4279 Fax: +1-202-476-4988 e-mail: MTorii@childrensnational.org (1)
University of Queensland, School of Veterinary Science, Faculty of Science (1)
Department of Clinical Sciences, Cornell University, 930 Campus Rd, Ithaca, NY, 14853, USA (1)
Functional Proteomics Laboratory, Department of Science and Technology, Federal University of Sao Paulo, UNIFESP, Sao Jose dos Campos, Sao Paulo, Brazil (1)
Department for Cell Biology BioMedizinisches Centrum - BMC LMU Muenchen, Med. Faculty Großhaderner Straße 9 82152 Planegg-Martinsried (1)
Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China. (1)
Proteomics Lab, Odense University Hospital, Odense DK (1)
Institute of Pharmacology and Toxicology, University of Zurich, CH-8057 Zurich, Switzerland. (1)
Museum national d'Histoire naturelle (1)
Laboratory of Developmental Genetics, Department of Molecular Biology and ULB Neuroscience Institute (UNI), Université Libre de Bruxelles, Gosselies 6041, Belgium. (1)
Vanderbilt University departments of Medicine and Pathology, Microbiology, and Immunology (1)
Vanderbilt University Proteomics Core; Children’s Hospital Los Angeles, University of Southern California (1)
Department of Pathology, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands (1)
Proteomics Unit at University of Bergen (1)
Laboratory of Reproductive Biology, Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Vestec, Czech Republic (1)
Ghent University, 4Brain, department of Neurology, Ghent University Hospital (1)
Dept. Oncology-Pathology, Science for Life Laboratory, Karolinska Institutet, Sweden (1)
Guangzhou Key Laboratory of Insect Development Regulation and Application Research, Institute of Insect Science and Technology & School of Life Sciences, South China Normal University GuangZhou China (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Department of Histology and Embryology, Nanjing Medical University (1)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)

Keyword

Immunoconjugates (2)
Sirolimus (2)
Immunoglobulin G (2)
Antibodies (2)
Immunoglobulins (2)
Antibodies, Monoclonal (2)
Trastuzumab (2)
Daunorubicin (1)
Gamma Secretase Inhibitors and Modulators (1)
2,2-dimethyl-N-(6-oxo-6,7-dihydro-5H-dibenzo(b,d)azepin-7-yl)-N'-(2,2,3,3,3-pentafluoropropyl)malonamide (1)
Neglected Diseases (1)
Orphan Diseases (1)
Rare Disease Research (1)
Registries (1)
Batten Disease (1)
Mucolipidosis IV (1)
Undiagnosed (1)
Uncommon Disease (1)
Hypersomnia (1)
Marinesco-Sjogren Syndrome (1)
4p-/Wolf-Hirschhorn Syndrome (1)
Wiedermann-Steiner Syndrome (1)
Hemophagocytic Lymphohistiocytosis (HLH) (1)
Behcet’s Disease (1)
Jansen metaphyseal chondrodysplasia (1)
Chronic recurrent multifocal osteomyelitis (CRMO) (1)
Hereditary Sensory and Autonomic Neuropathy (1)
Nephropathic infantile cystinosis (1)
Ocular cystinosis (1)
Spinal Bulbar Muscular Atrophy (SBMA) (1)

IsPrivate

False (2)

Classification

bacteria (28)
viruses (1)
protozoa (1)

Study type

Transcription profiling by array (927)
RNA-seq of coding RNA (192)
ChIP-seq (52)
Methylation profiling by array (43)
Methylation profiling by high throughput sequencing (27)
Comparative genomic hybridization by array (22)
RNA-seq of non coding RNA (20)
Unknown experiment type (19)
RNA-seq of coding RNA from single cells (18)
Transcription profiling by SAGE (11)
Transcription profiling by RT-PCR (7)
Other (7)
ChIP-chip by array (6)
RNA-seq of total RNA (6)
MicroRNA profiling by array (4)
DNA-seq (4)
ChIP-chip by tiling array (3)
Genotyping by array (3)
Human - High-throughput sequencing (2)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Bisulfite-seq (2)
ATAC-seq (2)
ScATAC-seq (2)
Baseline (1)
Two-color microarray (1)
Animal - One-color microarray (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)

Release Date

2022 (722)
2023 (666)
2021 (658)
2024 (616)
2025 (609)
2020 (492)
2019 (425)
2018 (369)
2015 (363)
2014 (356)
2016 (323)
2013 (288)
2017 (285)
2012 (225)
2010 (193)
2011 (183)
2008 (129)
2009 (107)
2026 (80)
2007 (77)
2006 (22)
2005 (18)
2004 (9)
2003 (8)
2002 (2)
2000 (2)
1999 (2)
1998 (2)
1997 (2)
2001 (1)

Location

United States (12)
Germany (2)
Guam (1)
India (1)
Puerto Rico (1)
Portugal (1)
Turkey (1)
Canada (1)
Australia (1)
Japan (1)

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Expression profiles of cultured human epididymis cells reveal the functional diversity of caput, corpus and cauda regions.

Purpose: To compare the transcriptome profiles (RNA-seq) of cultured human epididymis cells and tissue from the caput, corpus and cauda regions of the human epididymis. Methods: Human epididymis tissue was obtained with Institutional Review Board approval from 3 patients (UC05, UC06, UC09, range: 22...

ORGANISM(S): Homo sapiens

2016-01-04 | E-GEOD-72986 | biostudies-arrayexpress

Proteome dynamics during postnatal mouse corpus callosum development

Formation of cortical connections requires the precise coordination of several discrete stages. This is particularly significant with regard to the corpus callosum, the largest white matter structure bridging both cerebral hemispheres, whose development undergoes several dynamic stages including the...

ORGANISM(S): Mus musculus (Mouse)

2017-03-29 | PXD005271 | Pride

Lipid composition of isolated lipid droplets from the functional bovine corpus luteum

Not available

ORGANISM(S): Bos taurus

ST001286 | MetabolomicsWorkbench

Proteome of the Human Corpus Callosum

Characterization of the human Anterior Temporal Lobe and Corpus Callosum: C-HPP

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-06-10 | MSV000083947 | MassIVE

Distinct Cellular Origins for Serotonin-Expressing and Enterochromaffin-like Cells in the Gastric Corpus

The alimentary tract contains a diffuse endocrine system comprising enteroendocrine cells that secrete peptides or biogenic amines to regulate digestion, insulin secretion, food intake, and energy homeostasis. Lineage analysis in the stomach revealed that a significant fraction of endocrine cells in...

ORGANISM(S): Mus musculus

2013-12-12 | E-GEOD-53214 | biostudies-arrayexpress

Transcriptional analysis reveals the molecular details of atrophic gastritis in Helicobacter pylori infected corpus mucosa

The majority of gastric cancer cases are believed to be caused by chronic infection with the bacterium Helicobacter pylori, and atrophic corpus gastritis is a predisposing condition to gastric cancer development. We aimed to increase understanding of the molecular details of atrophy by performing a ...

ORGANISM(S): Homo sapiens

2014-02-04 | E-GEOD-27411 | biostudies-arrayexpress

Proteome of the Human Corpus Callosum

Characterization of the human Anterior Temporal Lobe and Corpus Callosum: C-HPP

ORGANISM(S): Homo sapiens (Human)

2014-06-05 | PXD000547 | Pride

Brain corpus callosum human proteome project chromosome-based hpp

Single cell RNA-seq of Pgc+ cells in homeostasis and upon injury

The purpose of this experiment is to assess and characterize injury response of the gastric epithelial cells in trancriptomic level. Pgc+ epithelial cells (excluding parietal cells and enteroendocrine cells) were isolated from the mouse gastric corpus without injury or at 1d after DMP777-mediated ac...

ORGANISM(S): Mus musculus

2022-05-05 | E-MTAB-10371 | biostudies-arrayexpress

Bovine Corpus Luteum Proteomics during Different Reproductive and Physiological Stages

Corpus luteum (CL) is an endocrine structure that undergoes substantial changes over short intervals during the bovine reproductive (estrous) cycle. These changes are regulated by a vast array of signaling molecules, mainly proteins, that govern reproduction. We collected a comprehensive set of CLs ...

ORGANISM(S): Bos taurus (Bovine)

2026-02-19 | PXD069851 | Pride

Expression data from amoeboid and ramified microglia isolated from the corpus callosum of 5-day and 4-week old rat brain

Microglia, the resident immune cells of the central nervous system (CNS), have two distinct phenotypes in the developing brain: amoeboid form, known to be amoeboid microglial cells (AMC) and ramified form, known to be ramified microglial cells (RMC) alongside several intermediate forms. The AMC are ...

ORGANISM(S): Rattus norvegicus

2011-06-11 | E-GEOD-29885 | biostudies-arrayexpress

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