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UnknownAcquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries.
Not available
S-EPMC7338082 | biostudies-literature
UnknownQualitative and Quantitative Shotgun Proteomics Data Analysis from Data-Dependent Acquisition Mass Spectrometry.
Not available
S-EPMC8583964 | biostudies-literature
UnknownPAnalyzer: a software tool for protein inference in shotgun proteomics.
Not available
S-EPMC3548767 | biostudies-literature
ProteomicsComparative analysis of DDA- and DIA-PASEF methods for proteomics analysis of human valve interstitial cells and osteoblasts during osteogenic differentiation
Shotgun proteomics is one of the key "omics" methods, the methodology of which is rapidly developing. Mass spectrometers of the TimsToF series (Bruker) with ion mobility are one of the young technological platforms for shotgun proteomics in which both data dependent (DDA) and data independent acquis...
ORGANISM(S): Homo sapiens (Human) 
2024-11-12 | PXD036566 | Pride
Data independent acquisition Pasef Shotgun proteomics Homo sapiens Timstof pro Calcific aortic valve disease 
ProteomicsRed blood cells protein profile is modified in breast cancer patients
We characterized the proteomic composition of RBCs from 53 breast cancer patients (stages I-III and IV), compared with 33 healthy donors. For that, we performed two different proteomic analyses (LC-MS/MS in DDA mode-shotgun- and a SWATH-MS) using the Triple TOF 6600 technology.
ORGANISM(S): Homo sapiens (Human) 
2023-01-17 | PXD030936 | Pride
Red blood cells (rbcs)  breast cancer Metastasis 
UnknownShotgun proteomics data on the impact of hyperglycaemia on platelet protein acetylation by aspirin.
Not available
S-EPMC6288982 | biostudies-literature
UnknownSimilar, but not the same: multiomics comparison of human valve interstitial cells and osteoblast osteogenic differentiation expanded with an estimation of data-dependent and data-independent PASEF proteomics.
Not available
S-EPMC11724719 | biostudies-literature
UnknownMaximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA).
Not available
S-EPMC3879624 | biostudies-literature
ProteomicsImpact of fibrillar collagen scaffold on corneal stromal fibroblasts protein expression
The human cornea relies on its extracellular matrix (ECM) properties, with corneal stromal fibroblasts (CSFs) crucial for ECM remodeling. We studied the effects of nanofibrillar materials on CSFs using a decellularized human amniotic membrane (dHAM) and fibrillar collagen scaffold (FCS). FCS enhance...
ORGANISM(S): Homo sapiens (Human) 
2024-09-02 | PXD048096 | Pride
Fibrillar collagen scaffold Timstof pro Dda-pasef Corneal keratocytes Focal adhesion Extracellular matrix 
ProteomicsProteomics of the phytopathogen Dickeya dadantii
Here, we present the proteome characterization of Dickeya dadantii by shotgun proteomics (Data Dependent acquisition, DDA mode).
ORGANISM(S): Dickeya dadantii subsp. dadantii 
2017-01-02 | PXD004438 | Pride
Lc-msms Bacteria Mrm assay 
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