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TranscriptomicsTranscription profiling of S. cerevisiae to high carbon dioxide concentrations
Physiological effects of carbon dioxide and impact on genome-wide transcript profiles were analysed in chemostat cultures of Saccharomyces cerevisiae. In anaerobic, glucose-limited chemostat cultures grown at atmospheric pressure, cultivation under CO2-saturated conditions had only a marginal (<10%)...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-16 | E-GEOD-8900 | biostudies-arrayexpress
TranscriptomicsGene deletion expression profiles of yeast chromatin modifiers
Packaging of DNA into chromatin has a profound impact on gene expression. To understand how changes in chromatin influence transcription, we analyzed 165 mutants of chromatin machinery components in Saccharomyces cerevisiae. mRNA expression patterns change in 80% of mutants, always with specific eff...
ORGANISM(S): Saccharomyces cerevisiae 
2011-05-23 | E-GEOD-25909 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast under conditions of ammonium, L-alanine or L-glutamine limitation
Response of Saccharomyces cerevisiae to Ammonium, L-alanine, or L-glutamine Limitation. The protrotophic laboratory strain CEN.PK113-7D (MAT a) was grown in laboratory fermentors with a working volume of 1 litre at dilution rate (D) of 0.20 per hour (in triplicate for each nitrogen limited condition...
ORGANISM(S): Saccharomyces cerevisiae 
2006-06-13 | E-MEXP-724 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast grown in fermentors at different dilution rates
the protrotophic laboratory strain CEN.PK113-7D (MAT a) was grown in laboratory fermentors with a working volume of 1 litre at dilution rates of 0.02, 0.05, 0.10 (in triplicate), 0.20 (in triplicate), 0.25, and 0.33 per hour (in triplicate). At steady state, samples from each of the 12 continuous cu...
ORGANISM(S): Saccharomyces cerevisiae 
2022-11-21 | E-MEXP-593 | biostudies-arrayexpress
OtherPhosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast.
Data from ProteomeXchange, PXD ID: PXD001445. File: vagas_O1210_369.c.mzXML. Published as part of Mol Syst Biol. 2014 Dec 9;10(12):767 . From the Abstract: {{i}} Cells respond to environmental stimuli via specialized signaling pathways. Concurrent stimuli trigger multiple pathways that integrate in...
ORGANISM(S): Yeast 
GPM32320005651 | GPMDB
Resource Reanalysis 
ProteomicsThe termite fungal cultivar Termitomyces combines diverse enzymes and oxidative reactions for plant biomass conversion
Macrotermitine termites have domesticated fungi in the genus Termitomycesas their primary food source using predigested plant biomass. To access the full nutritional value of lignin-enriched plant biomass, the termite-fungus symbiosis requires the depolymerization of this complex phenolic polymer. W...
ORGANISM(S): Termitomyces sp. 
2021-05-12 | PXD025936 | Pride
Termitomyces Metabolites Lignocellulose Redox chemistry Symbiosis Redox proteins Secondary metabolism Biodegradation Lignin degradation 
TranscriptomicsTranscription profiling of fission yeast as telomeres shorten in trt1- strains, and to compare survivors with linear and circular chromosomes
Time course experiment to watch RNA expression profiles as telomeres shorten in trt1- strains, and to compare survivors with linear and circular chromosomes.
ORGANISM(S): Schizosaccharomyces pombe 
2005-03-01 | E-MEXP-201 | biostudies-arrayexpress
TranscriptomicsTranscriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii
Two S. rolfsii transcriptomes obtained from scleroglucan-producing and scleroglucan-nonproducing conditions were pooled and sequenced using the 454 pyrosequencing technique yielding ~350,000 reads. These could be assembled into 21,937 contigs and 171,833 singletons, for which 6,951 had significant m...
ORGANISM(S): Athelia rolfsii 
2010-05-15 | E-GEOD-21040 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast transcription factor deletion strains perturbed with methyl-methanesulfonate
Gene expression profiles of transcription factor deletion strains (S.cerevisiae) perturbed with 0.03% methyl-methanesulfonate for 60 minutes
ORGANISM(S): Saccharomyces cerevisiae 
2006-05-19 | E-TABM-93 | biostudies-arrayexpress
GenomicsIntegrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4
Binding of transcription factors to DNA is a key regulatory step in the control of gene expression. DNA sequences with high affinity for transcription factors occur more frequently in the genome than instances of genes bound or regulated by these factors. Although several mechanisms have been iden...
ORGANISM(S): Saccharomyces cerevisiae 
2011-09-27 | E-GEOD-29506 | biostudies-arrayexpress
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