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ProteomicsA novel integrated extraction protocol for multi-omic studies in heavily degraded samples
The combination of multi-omic techniques, e.g. genomics, transcriptomics, proteomics, metabolomics and epigenomics has revolutionised studies in medical research. These are employed to support biomarker discovery, better understand molecular pathways and identify novel drug targets. Despite concerte...
ORGANISM(S): Sus scrofa domesticus (domestic pig) 
2024-08-09 | PXD047606 | Pride
Integrated protocol Multi-omics Ancient dna Extraction protocol Pig brain Degraded omics 
UnknownA Novel Panel of 43 Insertion/Deletion Loci for Human Identifications of Forensic Degraded DNA Samples: Development and Validation.
Not available
S-EPMC7990895 | biostudies-literature
TranscriptomicsAdaptation of Bacillus subtilis carbon core metabolism to simultaneous nutrient limitation and osmotic challenge
Here, we investigated for the first time the systems-wide response of B. subtilis to different simultaneous stresses, i.e. nutrient limitation and high osmolarity. To address the anticipated complexity of the cellular response networks, we combined chemostat experiments under conditions of carbon li...
ORGANISM(S): Bacillus subtilis 
2014-03-31 | E-GEOD-53333 | biostudies-arrayexpress
UnknownIntegrative Omics Analysis Unravels Microvascular Inflammation-Related Pathways in Kidney Allograft Biopsies.
Not available
S-EPMC8593247 | biostudies-literature
UnknownUncovering extensive post-translation regulation during human cell cycle progression by integrative multi-'omics analysis.
Not available
S-EPMC6820968 | biostudies-literature
ProteomicsControl of protein accumulation by the LON2 peroxisomal protease and autophagy
Peroxisomes are membrane-bound eukaryotic organelles that house essential metabolic pathways. Many of these pathways generate damaging reactive oxygen species (ROS) that also function as signaling molecules. In Arabidopsis thaliana, damaged or obsolete peroxisomal proteins can be degraded by the LON...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-05-06 | PXD022921 | Pride
Protease Peroxisomes Pexophagy Chaperone 
UnknownIntegrated Multi-omics Investigations Reveal the Key Role of Synergistic Microbial Networks in Removing Plasticizer Di-(2-Ethylhexyl) Phthalate from Estuarine Sediments.
Not available
S-EPMC8269228 | biostudies-literature
TranscriptomicsA novel metabolic monitoring system identified nutrition-mediated microbial interactions
"Omics" technologies have been developed to understand the whole complex microbial systems; however, most omics studies reported so far were utilized to analyze the living matters of “single-species”. To understand the cell-cell interaction in the gut microbial complex, we selected to exam...
ORGANISM(S): Escherichia coli 
2011-09-30 | E-GEOD-18474 | biostudies-arrayexpress
ProteomicsIntegrative analysis of proteome and transcriptome dynamics during Bacillus subtilis spore revival
Description Bacillus subtilis forms highly resistant, metabolically inactive spores upon nutrient limitation. These endospores pose challenges to the food and medical sectors. Spores reactivate their metabolism upon contact with germinants through germination and outgrowth, and then develop into ve...
ORGANISM(S): Bacillus Subtilis (ncbitaxon:1423) 
2020-04-02 | MSV000085217 | MassIVE
UnknownGenetic diversity analysis of forty-three insertion/deletion loci for forensic individual identification in Han Chinese from Beijing based on a novel panel.
Not available
S-EPMC8913921 | biostudies-literature
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