Dendritic cell proteomics

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Proteomics (428)
Unknown (206)
Genomics (22)
Transcriptomics (18)
Other (5)
Multiomics (3)
Metabolomics (3)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (316)
Andropogon gerardi (316)
Bacteria (316)
Canis lupus familiaris (316)
Cnidaria (316)
Ectopseudomonas oleovorans CECT 5344 (316)
Ensifer adhaerens (316)
Enterococcus faecalis (316)
Globicatella sanguinis (316)
Halictus scabiosae (316)
Human immunodeficiency virus 1 (316)
Mesocricetus auratus (316)
Methylohalobius crimeensis 10Ki (316)
Miscanthus x giganteus (316)
Mus musculus (316)
Panicum virgatum (316)
Pseudomonas aeruginosa SJTD-1 (316)
Rabies virus Nishigahara RCEH (316)
Rattus norvegicus (316)
Rattus rattus (316)
Rhodococcus jostii RHA1 (316)
Mus musculus (37)
Homo sapiens (29)
unidentified (3)
synthetic construct (1)
Bos taurus (1)
Haemaphysalis longicornis (1)
Mus (1)
cellular organisms (1)
Caenorhabditis elegans (1)

Organisms

Homo sapiens (11)
Mus musculus (7)
Bos taurus (1)

Repository

pride (316)
MassIVE (70)
iProX (24)
geo (22)
ENA (20)
jPOST (9)
biostudies-arrayexpress (8)
MetaboLights (3)
GPMDB (2)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Dendritic cell (132)
Blood (80)
Cell culture (58)
Brain (40)
B cell (28)
T cell (28)
Macrophage (24)
Bone marrow (21)
Monocyte (16)
Primary cell (16)
Epithelial cell (13)
Neutrophil (13)
Blood cell (12)
Erythrocyte (8)
Blood plasma (7)
Leukocyte (7)
Liver (6)
Platelet (6)
Skin (6)
Spleen (6)
Fibroblast (5)
Keratinocyte (5)
Melanocyte (5)
Permanent cell line cell (5)
Lung (4)
Lymph node (4)
Natural killer cell (4)
Peripheral blood mononuclear cell (4)
Blood serum (3)
Cerebrospinal fluid (3)

Disease

Disease free (72)
Influenza (6)
Herpes simplex (5)
Tularemia (5)
Acute leukemia (4)
Alzheimer's disease (3)
Amyotrophic lateral sclerosis (3)
Breast cancer (3)
Colon cancer (3)
Parkinson's disease (3)
Rheumatoid arthritis (3)
Wounds and Injuries (3)
Not Available (2)
Glioblastoma (2)
Immune system (2)
Lymphoma (2)
Non-small cell lung carcinoma (2)
Obesity (2)
Alcohol (1)
Allergy (1)
Autism spectrum disorder (1)
Autosomal hemophilia A (1)
Avian influenza (1)
Bacterial infectious disease (1)
Blastic plasmacytoid dendritic cell neoplasm (1)
Brooke-Spiegler syndrome (1)
Huntington Disease (1)
Lymphoma (1)
Parkinsonism (1)
Pelger-Huet anomaly (1)

Technology Type

Mass Spectrometry (316)
Shotgun proteomics (128)
Top-down proteomics (71)
Bottom-up proteomics (54)
Data-dependent acquisition (40)
Affinity purification coupled with mass spectrometry proteomics (27)
Gel-based experiment (22)
Data-independent acquisition (11)
SWATH MS (9)
Immunopeptidomics (6)
NMR spectroscopy (2)
Affinity proteomics (2)
All-ion fragmentation (2)
DiaPASEF (2)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Glycoproteomics (1)
HDMSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Orbitrap Fusion Lumos (14)
Q Exactive (10)
LTQ Orbitrap Velos (8)
Orbitrap Fusion (5)
Q Exactive HF (5)
Q Exactive Plus (5)
Q Exactive HF-X (4)
LTQ (3)
Orbitrap Exploris 480 (3)
Instrument (2)
LTQ Orbitrap Elite (2)
TimsTOF Pro (2)
TimsTOF fleX (2)
TripleTOF 5600 (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina NovaSeq 6000 (1)
Bruker timsTOF Pro (1)
Clarus SQ 8S Mass Spectrometer (1)
Easy-nLC 1000 UHPLC system (1)
GC-MS (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Fusion ETD (1)
Orbitrap fusion lumos (1)
QTRAP 5500 (1)
QTRAP 6500+ (1)
TripleTOF 6600 (1)
UltrafleXtreme (1)
Exactive (Thermo Scientific) (1)
LTQ Orbitrap XL (1)
AXIMA CFR (1)

Publication Date

2022 (87)
2024 (56)
2025 (55)
2026 (45)
2023 (41)
2021 (28)
2019 (28)
2020 (27)
2017 (20)
2016 (16)
2018 (15)
2015 (14)
2009 (3)
2010 (2)
2013 (1)
2014 (1)
2012 (1)
2011 (1)

UNIPROT ID/AC

A0A9S2 (1)
A1X3T7 (1)
A2V8C3 (1)
A3QM97 (1)
A3QMB9 (1)
A3QMC5 (1)
A3QMC8 (1)
A4UVK2 (1)
A4UVL1 (1)
A5A8P5 (1)
A5A8Q9 (1)
A5HJZ7 (1)
A5HU97 (1)
A5HU98 (1)
A5HWB2 (1)
A5JYR8 (1)
A5JYT3 (1)
A5JYU1 (1)
A5JYU5 (1)
A5JYX3 (1)
A5JYX4 (1)
A5JYX8 (1)
A5JYX9 (1)
A5PEW5 (1)
A5PEX5 (1)
A5PEY0 (1)
A5PEY3 (1)
A5Z2S2 (1)
A5Z2S4 (1)
A5Z2T4 (1)

CHEBI ID

CHEBI:30915 (2)
CHEBI:139311 (1)
CHEBI:141586 (1)
CHEBI:132950 (1)
CHEBI:33984 (1)
CHEBI:8087 (1)
CHEBI:18101 (1)
CHEBI:17164 (1)
CHEBI:28260 (1)
CHEBI:38083 (1)
CHEBI:22599 (1)
CHEBI:18222 (1)
CHEBI:17992 (1)
CHEBI:33942 (1)
CHEBI:17822 (1)
CHEBI:26271 (1)
CHEBI:22660 (1)
CHEBI:27570 (1)
CHEBI:30751 (1)
CHEBI:18186 (1)
CHEBI:26986 (1)
CHEBI:16811 (1)
CHEBI:17790 (1)
CHEBI:17234 (1)
CHEBI:28300 (1)
CHEBI:16236 (1)
CHEBI:16708 (1)
CHEBI:15887 (1)
CHEBI:16530 (1)
CHEBI:16870 (1)

Metabolite Name

5,6-dihydroxyprostaglandin F1a (1)
20beta-dihydrocortisol (1)
6alpha-Prostaglandin I1 (1)
Tartrate (1)
3-phenylpropionate (1)
Sn-glycero-3-phosphocholine (1)
O-phosphocholine (1)
Urocanate (1)
3-hydroxyphenylacetate (1)
Propionate (1)
Galactose (1)
Stachyose (1)
Fucose (1)
Valerate (1)
5-aminovalerate (1)
4-hydroxyphenylacetate (1)
Xylose (1)
3-methyl-2-oxovalerate (1)
UDP-glucose (1)
Glycolate (1)
Arabinose (1)
Ribose (1)
Methanol (1)
Isobutyrate (1)
Formate (1)
Ethanol (1)
Alpha-ketoisovalerate (1)
Uridine (1)
Tryptophan (1)
Taurine (1)

First Public Date

2026 (8)
2024 (4)
2025 (3)
2021 (2)
2023 (1)
2020 (1)
2015 (1)

Modification

Not available (3)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (1)
4x(2)H labeled dimethylated L-lysine (1)
N6-dimethyl-L-lysine (1)

Study type

RNA-seq of coding RNA (4)
Proteomic profiling by array (2)
Proteomic profiling by mass spectrometer (1)
Transcription profiling by array (1)

Release Date

2024 (27)
2020 (22)
2025 (19)
2023 (19)
2022 (19)
2021 (17)
2017 (15)
2016 (14)
2019 (14)
2026 (7)
2015 (6)
2010 (6)
2018 (6)
2014 (5)
2012 (5)
2011 (5)
2009 (3)
2013 (3)
2008 (2)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
Research Unit for Molecular Medicine, Department of clinical Medicine, Aarhus University, Aarhus, Denmark (5)
Infection and Immunity Program, Biomedicine Discovery Institute & Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria 3800, Australia (3)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (2)
Department of Molecular Pathology and Biology, Faculty of Military Health Sciences, University of Defence, Trebesska 1575, 500 01 Hradec Kralove, Czech Republic (2)
Division of Medical Inflammation Research, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (2)
EDyP (2)
Harald zur Hausen Institute of Virology, Uniklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany. (2)
Head of the Curie Institute Mass Spectrometry Platform (2)
IRCCS Istituto G Gaslini (2)
Immunology Unit, Department of Cell Biology, Physiology and Immunology, Institut de Biotecnologia i Biomedicina (IBB), Universitat Autònoma de Barcelona (UAB), Bellaterra (Cerdanyola del Vallès), Spain Biosensing and Bioanalysis Group, Institut de Biotecnologia i Biomedicina (IBB), Universitat Autònoma de Barcelona (UAB), Bellaterra (Cerdanyola del Vallès), Spain (2)
Indian Institute of Science Bengaluru (2)
The Rockefeller University (2)
University of Oxford (2)
- Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Portugal - ICVS/3B’s Associate Lab, PT Government Associated Lab, Portugal (1)
1.Precision Vaccines Program, Division of Infectious Diseases, Boston Children’s Hospital, Boston, MA, USA. 2. Department of Pediatrics, Harvard Medical School, Boston, MA, USA. (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Analytical Chemistry Lab Fondazione Istituto Italiano di Tecnologia Via Morego 30, 16163 Genova Italy (1)
Assistant Professor of Biochemistry Assistant Professor in Neurobiology Nanaline Duke Room 155 Box 3711, DUMC Durham, NC 27710 (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar Technical University of Munich (1)
Baylor College of Medicine Radiation Oncology (1)
Ben May Department of Cancer Research, University of Chicago (1)
BioMedizinisches Centrum Walter-Brendel-Zentrum für Experimentelle Medizin Ludwig-Maximilians-Universität München (1)
Bioanalytical Research Labs, Department of Biosciences & Medical Biology, Universität Salzburg, Austria (1)
Biochemistry and Pharmacology, MDHS Associate Dean of Graduate Research Bio21 Institute The University of Melbourne, Victoria 3010 Australia (1)
Bioheat and mass transfer laboratory, Med-X Research Institute, Shanghai Jiao Tong University (1)
Biomedical Research Center, University Hospital Hradec Kralove, Sokolska 581, 500 05 Hradec Kralove, Czechia (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biotech Research and Innovation Centre (BRIC), Faculty of Health and Medical Sciences, University of Copenhagen (1)

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Proteomic and single-cell transcriptomic dissection of human plasmacytoid dendritic cell response to influenza virus

Plasmacytoid dendritic cells [pDCs] represent a rare innate immune subset uniquely endowed with the capacity to produce substantial amounts of type-I interferons [IFN-I]. This function of pDCs is critical for effective antiviral defenses and has been implicated in autoimmunity. While IFN-I and selec...

ORGANISM(S): Human Plasmacytoid Dendritic Cell

2021-11-12 | MSV000088375 | MassIVE

PU.1 interactome mouse bone marrow derived dendritic cells

Mouse bone marrow derived dendritic cells were generated by culturing bone marrow cells at a density of 0.5x10E6 cells/ml in RPMI-1640 supplemented with 5% FCS, 1% Pen/Strep, 5microM 2-mercaptoethanol, 20ng/ml GM-CSF. At day 7 dendritic cells were stimulated or not with 500 ng/ml LPS, and collected ...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2018-11-30 | MSV000083176 | MassIVE

Transcription profiling of human dendritic cell maturation revealed by integration of proteome and transcriptome at the pathway level

Day 6 human monocyte derived dendritic cells were left unstimulated or matured for 2 days using the golden standard maturation cocktail currently used in clinical practice. Maturation induced changes in mRNA expression were determined by calculation of expression in mature DC relative to immature DC...

ORGANISM(S): Homo sapiens

2010-03-24 | E-MEXP-2290 | biostudies-arrayexpress

Iron flux in plasmacytoid dendritic cells; potential role for transferrin receptor beyond iron metabolism

Plasmacytoid dendritic cells (pDCs) are critical antiviral sentinels known for rapid type I interferon (IFN-I) production. However, their proteomic profile and nutrient dependencies are not well understood. Here, we used absolute quantitative proteomics of ex vivo murine splenic pDCs to characterize...

ORGANISM(S): Mus musculus (Mouse)

2026-06-29 | PXD079623 | Pride

NicheProt: Cell-type-resolved proteomics of mouse spleen tissue compartments

This dataset contains proteomic analyses that validate the spatial proteomic technology, NicheProt, and its application to investigate dendritic cell phenotypes in inflammed mouse spleens. NicheProt is a 3D optical microscopy-guided, photobleaching-mediated cell barcoding approach to isolate intact ...

ORGANISM(S): Mus musculus (Mouse)

2026-03-19 | PXD075718 | Pride

Microscopy Dendritic cells Inflammation Cell barcoding Spatial proteomics

Proteome and phophoproteome analysis of distinct dendritic cell maturation states

Depending on their environment and their exposure to various factors, dendritic cells (DCs) exist in different activation and maturation states. The versatility of DCs allows them to shape the immune system towards an inflammatory or tolerant state depending on the antigens and the environment they ...

ORGANISM(S): Mus musculus (Mouse)

2017-11-27 | PXD003738 | Pride

Pathobionts Shotgun proteomics Dendritic cells Symbionts Inflammation Signaling pathways Maturation Voronoi treemaps Phosphoproteomics

Intestinal alcohol abuse sorted dendritic cells proteomics

Consumption of ethanol has detrimental effects on gastric organs such as the intestine. To demonstrate the deleterious effect of alcohol, we sacrificed isobaric feeding or ethanol feeding mice and sorted the dendritic cells from their intestine organ. The dendritic cells were analyzed by a small-sca...

ORGANISM(S): Mus musculus (Mouse)

2024-06-16 | PXD033700 | Pride

Dendritic cell proteomics Intestinal alcohol effect Ethanol mice

Regulation of dendritic cells and macrophages by an anti-apoptotic cell natural Ab that inhibits inflammatory arthritis

Although natural antibodies (NAbs) are present from birth, little is known about what drives their selection, and whether they have housekeeping functions. We now show that the prototypic T15-NAb, first identified because of its protective role in infection, is representative of a previously unknown...

ORGANISM(S): unidentified

2010-05-06 | E-GEOD-14969 | biostudies-arrayexpress

PU1 interactome in human monocyte derived dendritic cells

Human monocyte-derived DC were cultured at a density of 0.5x10E6 cells/ml in RPMI-1640 supplemented with 10% FCS, 1% Pen/Strep, 10 ng/ml GM-CSF and 10 ng/ml IL4. At day 7, they were stimulated or not with 500 ng/ml LPS. Cells were collected at day 10. Whole cell lystaes from 2x10E8 cells were used f...

ORGANISM(S): Homo Sapiens

2018-11-30 | MSV000083175 | MassIVE

Quantitative analysis of large-scale proteomic changes in LPS-activated monocyte-derived dendritic cells: A SWATH-MS study

Determination of global alterations in monocyte-derived dendritic cells in response to stimulation with lipopolysaccharide using SWATH-MS to provide insight into cellular mechanism driving dendritic cell maturation

ORGANISM(S): Homo sapiens (Human)

2019-03-18 | PXD008898 | Pride

Lipopolysaccharide Antigen presentation Leukocyte metabolism Quantitative proteomics Dendritic cell maturation

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