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TranscriptomicsTranscription profiling of Populus x canescens fine roots inoculated with Paxillus involutus in response to salt stress
Populus x canescens was inoculated with Paxillus involutus and grown in a climate chamber for 13 weeks. Afterwards, plants were salt stressed for 18 additional days with 150 mM NaCl in the nutrient solution. This resulted in 4 different treatments: no mycorrhiza
control (NC), mycorrhiza/control (...
ORGANISM(S): Populus tremula x Populus alba 
2009-09-16 | E-MEXP-1874 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of leaves of four Poplar clones growing in monoculture and stands mixed with Robinia at poor and rich soil sites
P. maximowiczii × P. trichocarpa (Hybride 275), P. maximowiczii × P. trichocarpa (Matrix 11), P. nigra × P. maximowiczii (Max 1) and P. trichocarpa plants were grown in the field, each in monoculture and in stands mixed with Robinia pseudoacacia, at two locations differing in soil nutrient levels. A...
ORGANISM(S): Populus maximowiczii x Populus nigra 
2020-10-10 | E-MTAB-9041 | biostudies-arrayexpress
MetabolomicsMulti-omics analysis of xylem sap uncovers dynamic modulation of poplar defenses by ammonium and nitrate
Xylem sap is the major transport route for nutrients from roots to shoots. In the present study, we investigated how variations in nitrogen (N) nutrition affected the metabolome and proteome of xylem sap and the growth of the xylem endophyte Brennaria salicis, and we also report transcriptional re-w...
2022-07-04 | MTBLS2305 | MetaboLights
TranscriptomicsTranscription profiling of EBV infected human A549 cells exposed to 10ng/ml TGF beta1 for 4 hours
Idiopathic pulmonary fibrosis (IPF) is a refractory and lethal interstitial lung disease; EBV has previously been localised to alveolar epithelial cells of IPF patients. The molecular process of the epithelial mesenchymal transition (EMT) in IPF remains still unknown. Using an oligonucleotide array ...
ORGANISM(S): Homo sapiens 
2008-06-13 | E-GEOD-5457 | biostudies-arrayexpress
GenomicsMINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells
Despite the established role of the transcription factor MYC in cancer, little is known about the involvement of lncRNAs in mediating MYC’s function. Here we have intersected RNA-sequencing data from MYC-inducible cell lines, from a cohort of 91 mature B-cell lymphomas and from sorted germinal-cente...
EGAS00001001199 | EGA
GenomicsGenome-wide identification of distinct miRNA-mRNA target regulation pairs in Non-Hodgkin lymphomas: a report from the ICGC MMML-Seq consortium
We obtained miRNA profiles by miRnome sequencing from ICGC MMML-Seq patients diagnosed with Burkitt lymphoma, diffuse large B-cell lymphoma and follicular lymphoma and provide evidence of subtype-specific miRNA expression differences. We describe differentially expressed, mutated, edited and not pre...
EGAS00001001394 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-16-07-2015-15:45:02:488-51 - samples
Despite the established role of the transcription factor MYC in cancer, little is known about the impact of a new class of transcriptional regulators, the long non-coding RNAs (lncRNAs), on the way MYC is able to influence cellular transcriptome. To this aim we have intersected RNA-sequencing data f...
EGAD00001001441 | EGA
MetabolomicsField study of the fire blight resistant cisgenic apple line C44.4.146

Cisgenesis, the genetic modification of a plant with genes from a sexually compatible plant, was used to confer fire blight resistance to the cultivar 'Gala Galaxy' by amendment of the resistance gene FB_MR5, resulting in the line C44.4146. To verify whether cisgenesis changed other tree-, flower...

2022-12-19 | MTBLS5810 | MetaboLights
ProteomicsDysregulation of FLVCR1-dependent mitochondrial calcium handling in neural stem cells causes congenital hydrocephalus.
Congenital hydrocephalus (CH), occurring in approximately 1/1000 live births, represents an important clinical challenge due to the limited knowledge of underlying molecular mechanisms. The discovery of novel CH-genes is thus essential to shed light on the intricate processes responsible for ventric...
ORGANISM(S): Homo sapiens (Human) 
2024-08-09 | PXD047897 | Pride
Calcium handling Mass spectrometry Flvcr1 
ProteomicsAregger_C12ORF49_BioID_2020_TripleTOF5600
This dataset consists of 18 raw MS files and associated peak lists and result files, acquired on AB SCIEX 5600 TripleTOF mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by Michael Aregger, affinity purification and mass spectrometric acquisition was performed ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-02-25 | MSV000085005 | MassIVE
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