Df-1 - OmicsDI

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Unknown (1256)
Transcriptomics (185)
Genomics (122)
Proteomics (74)
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Homo sapiens (61)
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Gallus gallus (23)
Aedes aegypti (17)
Drosophila melanogaster (17)
Rhizobium leguminosarum (10)
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dengue virus type 4 (1)
dengue virus type 2 (1)

Organisms

Gallus gallus (26)
Homo sapiens (17)
Mus musculus (11)
Drosophila melanogaster (7)
Spiroplasma chrysopicola DF-1 (1)
Dehalobium chlorocoercia DF-1 (1)
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unidentified (1)
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biostudies-arrayexpress (187)
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Tissue

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Pancreatic ductal adenocarcinoma (2)
Uninfected (1)
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Avian influenza (1)
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Cancer (1)
Neuroblastoma (1)
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Cardiovascular system disease (1)
Periodontitis (1)
COVID-19 (1)
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Acute leukemia (1)

Technology Type

Mass Spectrometry (64)
Shotgun proteomics (37)
Mass spectrometry (10)
Data-independent acquisition (7)
Data-dependent acquisition (6)
Bottom-up proteomics (6)
SWATH MS (5)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (2)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
SRM/MRM (1)

Instrument Platform

Illumina MiSeq (5)
Illumina HiSeq 2000 (5)
NextSeq 2000 (4)
NextSeq 500 (3)
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Illumina NovaSeq X (2)
MinION (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 4000 (2)
Agilent 7890B GC with 5977A MSD (2)
Compact (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
-- (1)
Element AVITI (1)
MiniSeq (1)
Agilent 2100 Bioanalyzer (1)
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Illumina Genome Analyzer IIx (1)
Illumina MiniSeq (1)
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NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
TripleTOF 5600+|1002584 (1)
Agilent 7200 GC-MS qToF (1)
MaXis 4G (1)
LTQ FT ULTRA (Thermo Scientific) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Agilent 6890 GC/5973N MSD (1)

Publication Date

2012 (27)
2015 (25)
2022 (21)
2016 (20)
2026 (19)
2014 (18)
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2023 (17)
2011 (17)
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2010 (16)
2013 (15)
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2008 (11)
2018 (8)
2007 (8)
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2017 (5)
2009 (3)
2006 (3)
2005 (2)
2004 (2)

CHEBI ID

CHEBI:15428 (5)
CHEBI:28300 (5)
CHEBI:18186 (5)
CHEBI:17151 (4)
CHEBI:17992 (4)
CHEBI:17268 (4)
CHEBI:16335 (4)
CHEBI:22653 (4)
CHEBI:26986 (4)
CHEBI:27266 (4)
CHEBI:25094 (4)
CHEBI:17716 (3)
CHEBI:24266 (3)
CHEBI:29987 (3)
CHEBI:64517 (3)
CHEBI:28635 (3)
CHEBI:28548 (3)
CHEBI:30746 (3)
CHEBI:28842 (3)
CHEBI:30653 (3)
CHEBI:16977 (3)
CHEBI:33508 (3)
CHEBI:28757 (3)
CHEBI:14314 (3)
CHEBI:16865 (3)
CHEBI:27897 (3)
CHEBI:44897 (3)
CHEBI:16958 (3)
CHEBI:6650 (3)
CHEBI:16811 (3)

Metabolite Name

Valine (3)
Tyrosine (3)
Glucose (3)
Glycine (3)
Ornithine|Citrullin (142) (2)
Octadecatrienoic acid (335) (2)
Octadecadienoic acid (337) (2)
Methionine (176) (2)
Melibiose (361) (2)
Lysine (156) (2)
Lactose (361) (2)
Homoserine (218) (2)
Glutamine (155) (2)
Glucose-6-phosphate (387) (2)
Gluconate (333) (2)
Beta-Alanine (248) (2)
Aminomalonic acid (218) (2)
Adenosine (236) (2)
Adenine (264) (2)
4-Aminobutanoate [GABA] (174) (2)
2-Isopropylmalate (275) (2)
2-Aminoadipate (260) (2)
N-docosane (2)
Myo-inositol (2)
Ethanolamine (2)
D-Biotin (2)
Pantothenate (2)
Succinic acid (2)
Fumaric acid (2)
Stearic acid (2)

First Public Date

2024 (12)
2025 (11)
2020 (11)
2014 (11)
2023 (9)
2022 (7)
2026 (6)
2019 (5)
2018 (5)
2015 (5)
2013 (3)
2017 (2)
2021 (1)
2016 (1)

Classification

viruses (1)

Study type

Transcription profiling by array (105)
RNA-seq of coding RNA (31)
ChIP-seq (8)
DNA-seq (8)
Methylation profiling by high throughput sequencing (8)
Other (5)
RNA-seq of non coding RNA (5)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
Human - Two-color microarray (1)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Bisulfite-seq (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (177)
2023 (128)
2025 (116)
2021 (114)
2020 (109)
2024 (105)
2019 (100)
2016 (76)
2014 (75)
2015 (75)
2018 (66)
2017 (50)
2012 (46)
2013 (39)
2011 (37)
2010 (35)
2026 (25)
2008 (20)
2009 (16)
2007 (16)
2006 (9)
2005 (4)
2004 (2)
2003 (1)
2002 (1)
1999 (1)

Lab affiliation

University of Virginia (2)
Professor and Vice Chairman for Research Department of Biochemistry and Molecular Genetics Co-Leader, Experimental Therapeutics Program UAB O'Neal Comprehensive Cancer Center Hugh Kaul Human Genetics Building, Kaul 504A The University of Alabama at Birmingham Birmingham, Alabama (2)
Marseille Proteomique, Inserm U1068, CNRS UMR7258, Aix Marseille Université U105 (1)
School of Biological Sciences University of Aberdeen United Kingdom (1)
University College Dublin, School of Medicine, Conway Institute Belfield Dublin 4, Ireland. (1)
CECAD Research Center, University of Cologne (Institute for Genetics) Joseph-Stelzmann-Str. 26 50931 Cologne Germany (1)
Department of Chemistry,University of Virginia,Charlottesville, VA 22903 USA (1)
Faculty of Medicine, University of Heidelberg, 69120 Heidelberg, Germany Division Proteomics of Stem Cells and Cancer, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 581, 69120 Heidelberg, Germany (1)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Scientist, IR-MUHC, Glen site Cancer Research Program Center for Translational Biology Assistant Professor, Gerald Bronfman Department of Oncology, Faculty of Medicine and Health Sciences, McGill University (1)
CECAD Institute, University of Cologne Joseph-Stelzmann-Straße 26 50931 Cologne Germany (1)
Jens Nielsen, PhD, Dr. Tech. Professor Director of Systems and Synthetic Biology Chief Scientific Officer Novo Nordisk Foundation Center for Biosustainability Systems and Synthetic Biology Chalmers University of Technology Kemivägen 10 SE-412 96 Göteborg SWEDEN (1)
Department of Pediatric Respiratory Medicine, Immunology and Critical Care Medicine, Charite ‐ Universitatsmedizin, Germany; German Center for Lung Research (DZL), Associated Partner Site, Germany; Berlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Germa (1)
Cell Plasticity and Epigenetic Remodeling (F190) Deutsches Krebsforschungszentrum Im Neuenheimer Feld 280 69120 Heidelberg (1)
Department of Pediatric Cardiology and Critical Care; Pulmonary Vascular Research Center; Hannover Medical School; Hannover; Germany (1)
IRCCS Istituto Ortopedico Galeazzi, Laboratorio di Applicazioni Biotecnologiche, Milan, Italy Department of Biomedical, Surgical and DentalSciences, Università degli Studi di Milano, Milan, Italy (1)
Institute of Cancer Research, London & Wellcome Trust Sanger Institute, Cambridge (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD,University of Piemonte Orientale, Corso Trieste 15/A, 28100, Novara, Italy (1)
UCD School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland (1)
Max-Delbrück Center for Molecular Medicine (1)
Smilow Center for Translational Research 12-124 3400 Civic Center Blvd Philadelphia, PA 19104 P: 215-573-5413 F: 215-898-5408 (1)
Sao Paulo State University Medical School Av. Prof. Mário Rubens Guimarães Montenegro, s/n 18618-687 Botucatu, São Paulo, Brazil. (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Laboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA. (1)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia 2Murdoch Children’s Research Institute, Melbourne, VIC 3052, Australia 3Victorian Clinical Genetics Services, Murdoch Children’s Research Institute, Melbourne, VIC, 3052, Australia (1)
Department of Chemistry The Scripps Research Institute Jupiter FL, USA (1)
Professor of Immunology (1)
Key Laboratory of Animal Virology of Ministry of Agriculture, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, PR China. (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 5Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 8Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
Department of Biochemistry, Charite Universitaetsmedizin Berlin, Germany (1)

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Spiroplasma chrysopicola DF-1

Spiroplasma chrysopicola DF-1 Genome sequencing

PRJNA184747 | ENA

Dehalobium chlorocoercia DF-1

PCB dechlorinating bacterium

PRJNA19303 | ENA

Combined transcriptomic and proteomic analysis of chicken DF-1 cells following innate immune stimulations

The goal of our study was to experimentally quantify both at the transcriptomic and proteomic level the effects of comprehensive innate immune stimulations in chicken. To this end, SILAC-labeled chicken DF-1 cells were mock-treated or treated with either ChIFN1 (1000 IU/mL for 6h), transfected poly ...

ORGANISM(S): Gallus gallus (Chicken)

2026-05-26 | PXD057686 | Pride

Genome-wide comparison of Chicken Embryo Fibroblasts (CEF) and DF-1 in response to recombinant chicken chIFN-Î± and infection with Infectious Bursal Disease Virus (IBDV)

The spontaneously immortalised chicken DF-1 cell line is rapidly replacing its progenitor primary chicken embryo fibroblasts (CEF) in studies on avian viruses but no comprehensive study has as yet been reported comparing their immune phenotype. We conducted microarray analysis of the DF-1 and CEF, i...

ORGANISM(S): Gallus gallus

2016-01-15 | E-MTAB-4028 | biostudies-arrayexpress

Differential gene expression in immortal DF-1 chicken embryo fibroblast cell line

Transcriptional profiling of chicken embryo fibroblast (CEF) cells comparing CEF derived immortal chicken embryo fibroblast cell line (DF-1). Goal was to determine differentially expressed genes of CEF which were changed responding DF-1.

ORGANISM(S): Gallus gallus

2011-05-12 | GSE29257 | GEO

Single cell RNA-seq in chicken's lung and DF-1 cell line

PRJNA834764 | ENA

Differential gene expression in immortal DF-1 chicken embryo fibroblast cell line

ORGANISM(S): Gallus gallus

2011-05-12 | E-GEOD-29257 | biostudies-arrayexpress

Deep sequencing analysis of differences in miRNA expression between IBDV-infected and Mock-infected DF-1 cells

To evaluate the change of miRNA expression profile in DF-1 cells in respond to Infectious bursal disease virus (IBDV) infection, Deep sequencing was performed by LC Sciences (Hangzhou, China) on DF-1 cells infected with mock or IBDV Lx strain at an MOI of 1 for 24 h.

ORGANISM(S): Gallus gallus

2017-10-13 | GSE90095 | GEO

In Vitro and In Vivo Metabolomic Profiling after Infection with Virulent Newcastle Disease Virus

Newcastle disease (ND) is an acute, febrile, and highly contagious disease caused by the virulent Newcastle disease virus (vNDV) worldwide. The disease causes serious economic losses to the poultry industry. However, the metabolic changes caused by vNDV infection remain unclear. The objective of thi...

2019-12-20 | MTBLS1115 | MetaboLights

Chicken IRF7 knockout by CRISPR-Cas9 in DF-1 and in vitro H6N2 infection followed by RNA-seq

PRJNA489671 | ENA

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