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ProteomicsTranscriptional and secretome analysis of Rasamsonia emersonii lytic polysaccharide mono-oxygenases
The study is first to describe the temporal and differential transcriptional expression of two lytic polysaccharide monooxygenase (LPMO) genes of Rasamsonia emersonii in response to various carbon sources. The mass spectrometry based expression of carbohydrate active enzymes (CAZymes) on different c...
ORGANISM(S): Fungi Rasamsonia emersonii 
2024-10-17 | PXD046292 | Pride
Lc-msms Rasamsonia emersonii Polysaccharide monooxygenase 
ProteomicsBlocking utilization of major plant biomass polysaccharides leads Aspergillus niger towards utilization of minor components.
Fungi produce a wide range of enzymes that allow them to grow on diverse plant biomass. Wheat bran is a low-cost substrate with high potential for biotechnological applications. It mainly contains cellulose and (arabino)xylan, with starch, proteins, lipids and lignin as minor components. In this stu...
ORGANISM(S): Aspergillus niger NRRL3 
2021-06-28 | PXD023338 | Pride
Aspergillus niger Combinatorial deletions Lc-msms. Transcription factors Plant biomass Regulation 
ProteomicsGenomic Survey of Aspergilli Proteases
We have performed a combined analysis of comparative genomics, proteomics and enzymology tests on seven Aspergillus species grown on wheat bran and sugar beet pulp to identify the various proteases and their productivities in Aspergilli.
ORGANISM(S): Aspergillus niger Aspergillus flavus Aspergillus terreus Aspergillus oryzae var. oryzae Neosartorya fischeri Aspergillus fumigatus Af293 Emericella nidulans (Aspergillus nidulans) 
2017-01-04 | PXD000982 | Pride
Aspergillus Proteases Secretome 
ProteomicsThe chimeric GaaR::XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger
Aspergillus niger is a filamentous fungus well known for its ability to produce a wide variety of pectinolytic enzymes, which have many applications in the industry. The transcriptional activator GaaR is induced by 2-keto-3-deoxy-L-galactonate, a compound derived from D-galacturonic acid, and plays ...
ORGANISM(S): Aspergillus niger NRRL3 
2021-11-18 | PXD025383 | Pride
Aspergillus niger Chimeric transcription factor D-xylose Crispr/cas9 Pectinases 
ProteomicsWidespread glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens
Carbon catabolite repression (CCR) occurs in the presence of sufficient concentrations of easy metabolizable carbon sources (e.g. glucose), down-regulating the expression of genes encoding enzymes involved in the breakdown of complex carbon sources. The extent of CCR at a global level is unknown in ...
ORGANISM(S): Dichomitus squalens 
2019-10-07 | PXD014774 | Pride
Cazymes Dichomitus Carbon catabolite repression Regulation 
ProteomicsTwo closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, produce orthologous plant cell wall degrading enzymes for spruce wood degradation
Unique ability of basidiomycete white rot fungi to degrade all components of plant cell walls makes them indispensable organisms in global carbon cycle. In this study, we analyzed proteomes of two closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, while growing on solid sp...
ORGANISM(S): Ceriporiopsis subvermispora Obba rivulosa 
2022-08-08 | PXD030609 | Pride
Cazymes White rot fungi Obba rivulosa Gelatoporia subvermispora Proteome Lignin biodegradation Lc-ms/ms 
ProteomicsComparative genomics reveals high biological diversity and specific adaptations in the fungal genus Aspergillus
The project compares the genomes of multiple Aspergillus species. In particular, the genes involved in the degradation of plant-derived biomass have been analyzed. As well, the extracellular proteins produced by the fungi during the utilization of sugar beet pulp and wheat bran were examined by LC-M...
ORGANISM(S): Aspergillus wentii Aspergillus zonatus Aspergillus aculeatus ATCC 16872 Aspergillus tubingensis Aspergillus carbonarius ITEM 5010 Aspergillus versicolor Aspergillus foetidus var. acidus Aspergillus brasiliensis Aspergillus sydowii 
2018-10-26 | PXD005563 | Pride
Extracellular proteins Biomass degradation Aspergilli Lc-ms/ms 
UnknownSarilumab in patients admitted to hospital with severe or critical COVID-19: a randomised, double-blind, placebo-controlled, phase 3 trial.
Not available
S-EPMC8078879 | biostudies-literature
UnknownBurnout among surgeons before and during the SARS-CoV-2 pandemic: an international survey.
Not available
S-EPMC10810224 | biostudies-literature
UnknownMortality and pulmonary complications in patients undergoing surgery with perioperative SARS-CoV-2 infection: an international cohort study.
Not available
S-EPMC7259900 | biostudies-literature
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