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Proteomicsdia-PASEF analysis of human amygdala in Alzheimer’s disease
dia-PASEF analysis of human amygdala in Alzheimer’s disease
ORGANISM(S): Homo sapiens (Human) 
2023-06-28 | PXD038322 | Pride
Dia-pasef Alzheimer Human Amygdala 
ProteomicsRapid and ion mobility-resolved phosphoproteomics with dia-PASEF
Mass spectrometry-based phosphoproteomics has identified >150,000 post-translational phosphorylation sites in the human proteome. To disentangle their functional relevance, complex experimental designs that require increased throughput are now coming into focus. Here, we apply dia-PASEF on a trapped...
ORGANISM(S): Homo sapiens (Human) 
2022-10-26 | PXD033904 | Pride
Tims Technology Pasef Dia-pasef Phosphoproteomics Data-independent acquisition Ion mobility 
Proteomicsprm-PASEF and g-dia-PASEF analysis of plasma samples from colorectal cancer and control patients
Quantitative analysis of 10 CRC vs 10 control human plasma samples with the prm-PASEF and g-dia-PASEF acquisition methodes
ORGANISM(S): Homo sapiens (Human) 
2023-04-11 | PXD036594 | Pride
Pasef prm dia plasma colorectal cancer 
ProteomicsRapid and in-depth coverage of the (phospho-)proteome with deep libraries and optimal window design for dia-PASEF
Data-independent acquisition (DIA) methods have become increasingly attractive in mass spectrometry (MS)-based proteomics, because they enable high data completeness and a wide dynamic range. Recently, we combined DIA with parallel accumulation – serial fragmentation (dia-PASEF) on a Bruker trapped ...
ORGANISM(S): Homo sapiens (Human) 
2022-08-11 | PXD034128 | Pride
Pasef Egf Tims Data-independent acquisition Phosphoproteomics Systems biology 
ProteomicsExpanding the Characterization of Microbial Ecosystems using DIA-PASEF Metaproteomics
Metaproteomics is gaining momentum in microbiome research due to the multi-dimensional information it provides. However, current approaches have reached their detection limits. We present a highly-sensitive metaproteomic workflow using the extra information captured by Parallel Accumulation-Serial F...
ORGANISM(S): Microbiota 
2023-05-04 | PXD040947 | Pride
Metaproteomics Dia-pasef Mouse Chronic pain Gut microbiome 
Unknowndia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.
Not available
S-EPMC9270362 | biostudies-literature
UnknownIncreasing taxonomic and functional characterization of host-microbiome interactions by DIA-PASEF metaproteomics.
Not available
S-EPMC10613666 | biostudies-literature
ProteomicsComprehensive Proteomics Profiling of Zebrafish Retina Using a Hybrid DDA/DIA-PASEF Spectral Library on a timsTOF Pro 2 Mass Spectrometer
The zebrafish (Danio rerio) retina has been increasingly used for studying vertebrate visual processing and ocular growth regulation as it has a high anatomical and physiological similarity to the human eye. Recently, the integration of trapped ion mobility spectrometry (TIMS) with parallel accumula...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2026-06-17 | PXD076440 | Pride
Dia Retina Zebrafish Dda 
Proteomicsdia-PASEF analysis of human amygdala in Parkinson’s disease
dia-PASEF analysis of human amygdala in Parkinson’s disease
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD043503 | Pride
Amygdala Parkinson Human 
UnknownAssessing fecal metaproteomics workflow and small protein recovery using DDA and DIA PASEF mass spectrometry.
Not available
S-EPMC11480776 | biostudies-literature
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