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MetabolomicsMulti-omics analysis of differential expression profiles in Vibrio natriegens strain VCOD-2 under optimal and high-salinity conditions

This study employs integrated multi-omics analysis to systematically investigate the proteome and metabolome of marine bacterium Vibrio natriegens strain VCOD-2 (ATCC 14048) under optimal salinity (3% NaCl) and high-salinity stress (8% NaCl) conditions, aiming to reveal the molecular me...

2026-03-18 | MTBLS14070 | MetaboLights
TranscriptomicsBiochemical fractionation of HEK293 nuclei and RNA-seq of chromatin-associated and soluble-nuclear RNA
Biochemical fractionation of HEK293 nuclei and RNA-seq of chromatin-associated and soluble-nuclear RNA. Nuclei from three biological replicates were isolated by detergent lysis, fractionated, then three chromatin and three soluble RNA samples were converted to cDNA using Illumina TruSeq stranded pro...
ORGANISM(S): Homo sapiens 
2015-03-04 | E-GEOD-66478 | biostudies-arrayexpress
TranscriptomicsGenomewide demarcation of RNA PolII transcription units by physical fractionation of chromatin- ORF enrichment
Epigenetic modifications of chromatin serve an important role in regulating the expression and accessibility of genomic DNA. We report here a genomewide approach for fractionating yeast chromatin into two functionally distinct parts, one containing RNA polymerase II transcribed sequences, and the ot...
ORGANISM(S): Saccharomyces cerevisiae 
2006-08-30 | E-GEOD-5649 | biostudies-arrayexpress
TranscriptomicsGenomewide demarcation of RNA PolII transcription units by physical fractionation of chromatin- ORF-INT enrichment
Epigenetic modifications of chromatin serve an important role in regulating the expression and accessibility of genomic DNA. We report here a genomewide approach for fractionating yeast chromatin into two functionally distinct parts, one containing RNA polymerase II transcribed sequences, and the ot...
ORGANISM(S): Saccharomyces cerevisiae 
2006-08-30 | E-GEOD-5650 | biostudies-arrayexpress
ProteomicsComparison of fractionation proteomics for local SWATH library building
For data-independent acquisition by means of sequential window acquisition of all theoretical fragment ion spectra (SWATH), a reference library of data-dependent acquisition (DDA) runs is typically used to correlate the quantitative data from the fragment ion spectra with peptide identifications. Th...
ORGANISM(S): Homo sapiens (Human) 
2017-07-04 | PXD006190 | Pride
Library building Comparative study Swath-ms Fractionation proteomics Hesc 
ProteomicsSubcellular fractionation of Escherichia coli by differential solubilization and analysis by Maxquant LFQ-analysis
The Planctomycetes have unique cell architectures with heavily invaginated membrane networks, as here confirmed by three-dimensional models reconstructed from FIB-SEM images of Tuwongella immobilis and Gemmata obscuriglobus. We studied the subcellular proteomes of T. immobilis, and for comparison Es...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2021-04-06 | PXD022526 | Pride
Escherichia coli Subcellular fractionation 
ProteomicsSubcellular fractionation of Tuwongella immobilis by differential solubilization and analysis by Maxquant LFQ-analysis
The Planctomycetes have unique cell architectures with heavily invaginated membrane networks, as here confirmed by three-dimensional models reconstructed from FIB-SEM images of Tuwongella immobilis and Gemmata obscuriglobus. We studied the subcellular proteomes of T. immobilis, and for comparison Es...
ORGANISM(S): Tuwongella immobilis 
2021-04-06 | PXD022559 | Pride
Tuwongella immobilis Subcellular fractionation 
TranscriptomicsGenomewide demarcation of RNA PolII transcription units by physical fractionation of chromatin- ALL Arrays
Epigenetic modifications of chromatin serve an important role in regulating the expression and accessibility of genomic DNA. We report here a genomewide approach for fractionating yeast chromatin into two functionally distinct parts, one containing RNA polymerase II transcribed sequences, and the ot...
ORGANISM(S): Saccharomyces cerevisiae 
2006-08-30 | E-GEOD-5662 | biostudies-arrayexpress
TranscriptomicsGenome wide demarcation of RNA Polymerase II transcription Uuits Rrevealed by physical fractionation of chromatin- neutral enrichment
Genome-wide Demarcation of RNA Polymerase II Transcription Units Revealed by Physical Fractionation of Chromatin- Neutral enrichment
ORGANISM(S): Saccharomyces cerevisiae 
2005-10-07 | E-SMDB-2062 | biostudies-arrayexpress
TranscriptomicsGenomewide demarcation of RNA PolII transcription units by physical fractionation of chromatin- Neutral enrichment
Epigenetic modifications of chromatin serve an important role in regulating the expression and accessibility of genomic DNA. We report here a genomewide approach for fractionating yeast chromatin into two functionally distinct parts, one containing RNA polymerase II transcribed sequences, and the ot...
ORGANISM(S): Saccharomyces cerevisiae 
2010-07-01 | E-GEOD-5651 | biostudies-arrayexpress
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