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MetabolomicsUntargeted metabolomic profile of Saccharomyces cerevisiae (F2) hybrids (part II)
Not available
ORGANISM(S): Saccharomyces cerevisiae 
ST000870 | MetabolomicsWorkbench
ProteomicsTwo Maize Hybrids Seedlings and their parents
Two Chinese maize hybrids and their parents, were germinated and cultured to three-leaf stage, second seedling leaves from two hybrids and their parents, were used for proteins extraction and analysis by label-free.
ORGANISM(S): Zea Mays 
PXD015819 |
ProteomicsSART3 promotes homologous recombination repair by stimulating DNA–RNA hybrids removal and DNA end resection
DNA–RNA hybrids triggered by double-strand breaks (DSBs) are crucial intermediates during DSB repair, and their timely resolution requires numbers of RNA helicases, including DEAD box 1 (DDX1). However, how these helicases are recruited to DSB-induced hybrids in time remains largely unclear. Here, w...
ORGANISM(S): Homo sapiens (Human) 
2025-01-30 | PXD053595 | Pride
Sart3 Homologous recombination repair Dna–rna hybrids 
ProteomicsHuman SKI component SKIV2L regulates telomeric DNA-RNA hybrids and prevents telomere fragility
Super killer (SKI) complex is a well-known cytoplasmic 3′ to 5′ mRNA decay complex that functions with the exosome to degrade excessive and aberrant mRNAs. Recently, SKIV2L, the 3′ to 5′ RNA helicase of the human SKI (hSKI) complex has been implicated with the extraction of mRNA at stalled ribosomes...
ORGANISM(S): Homo sapiens (Human) 
2024-10-03 | PXD046955 | Pride
Skiv2l Genome instability Dna-rna hybrids Dna damage Telomere 
ProteomicsProteome Plasticity in Drosophila Hybrids
This submission contains 3 different datasets: - series A: D. melanogaster female ? D. simulans male embryos vs internal standard of pooled D. simulans and D. melanogaster (1:1) embryos - series B: D. simulans female ? D. melanogaster male embryos vs internal standard of pooled D. simulans and D. m...
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) Drosophila Simulans (ncbitaxon:7240) 
MSV000081535 | MassIVE
ProteomicsRNA-DNA hybrids prevent resection at dysfunctional telomeres
At critically short telomeres TERRA RNA-DNA hybrids become stabilized and drive homology-directed repair (HDR) to delay replicative senescence. However, even at long- and intermediate-length telomeres, not subject to HDR, transient TERRA RNA-DNA hybrids form, suggestive of additional roles. Here, we...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2023-01-18 | PXD034986 | Pride
Lc-ms/ms 
ProteomicsImpact of a mild nitrogen deficit on the leaf proteome of field-grown maize hybrids
A proteomic and metabolomic approach was conducted to decipher the biochemical bases of silage maize N utilization and metabolism in relation to growth and productivity. Leaf samples were collected on plants cultivated in the field, where they were subjected to optimal and low N fertilization treatm...
ORGANISM(S): Zea mays (Maize) 
2025-05-06 | PXD034145 | Pride
Field culture Leaves Shotgun proteomics Nitrogen deficit Maize 
ProteomicsStreptamidine, streptapyrimidone and spyrimidone production in Streptomyces albidoflavus J1074 and S. coelicolor M1146-pCAPSalbC
Data used to evaluate temporal progression of streptamidine, streptapyrimidone, spyrimidone and glycosylated spyrimidone production in Streptomyces albidoflavus J1074 and the heterologous host Streptomyces coelicolor M1146 expressing the streptamidine (ami) cluster. LC-MS/MS data used to characteris...
ORGANISM(S): Streptomyces Albidoflavus J1074 Streptomyces Coelicolor M1146 
2024-04-18 | MSV000094563 | MassIVE
Proteomicsm5C RNA methylation modified or unmodified DNA:RNA hybrids pulldown
The biotin labeled DNA:RNA hybrids with or without RNA m5C modification were incubated with lysates of 293 cells treated with H2O2, and were pulled down by Streptavidin. The proteins pulled down by the empty beads control, unmodified or m5C-modified hybrids were analyzed by mass spectrometry
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-04-29 | MSV000089337 | MassIVE
TranscriptomicsSweet corn: low- vs. high-yielding hybrids
Transcriptional profiling of sweet corn plant density (crowding stress) tolerance influencing yield. Tolerance to crowding stress has played a crucial role in improving agronomic productivity in field corn; however, commercial sweet corn hybrids vary greatly in crowding stress tolerance. The experim...
ORGANISM(S): Zea mays 
2016-01-05 | GSE73435 | GEO
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