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ProteomicsComparing the diagnostic classification accuracy of iTRAQ, peak-area, spectral-counting and emPAI methods for relative quantification in expression proteomics
We present a comparison of the diagnostic accuracy of iTRAQ with three label free methods (peak-area, spectral-counting, and emPAI) for relative quantification using a spiked proteome standard.
ORGANISM(S): Equus Caballus (ncbitaxon:9796) Bos Taurus (ncbitaxon:9913) Escherichia Coli (ncbitaxon:562) Oryctolagus Cuniculus (ncbitaxon:9986) Gallus Gallus (ncbitaxon:9031) Saccharomyces Cerevisiae (ncbitaxon:4932) 
2016-06-08 | MSV000079803 | MassIVE
ProteomicsThe mRNA-bound proteome of Leishmania mexicana is stage-regulated with distinct transcript target pools
Leishmania species parasite infections, termed the leishmaniases, cause significant global infectious disease burden. The lifecycle of the parasite embodies three main stages that require precise coordination of gene regulation to survive drastic environmental shifts transitioning from sandfly to ma...
ORGANISM(S): Leishmania Mexicana (ncbitaxon:5665) 
2018-10-11 | MSV000083023 | MassIVE
ProteomicsModelling glycan processing reveals Golgi-enzyme homeostasis upon trafficking defects and cellular differentiation
Description: These date form the basis for supplementary table 2 and supplementary figure 6 of the manuscript "Modelling glycan processing reveals Golgi-enzyme homeostasis upon trafficking defects and cellular differentiation" by P Fisher, H Spencer, J Thomas-Oates, AJ Wood, D Ungar in Cell Reports
ORGANISM(S): Homo sapiens (Human) 
2019-11-11 | PXD013211 | Pride
Mscs Glycan processing Markov chain monte carlo Mass spectrometry Cog complex Golgi apparatus 
ProteomicsProteomic analysis of digestive fluids of Thermobia domestica
Digestive fluids isolated from the foregut (crop) of adult specimens of T. domestica were analysed by shotgun proteomics in order to identify the putative carbohydrate-active enzymes involved in plant cell wall digestion.
ORGANISM(S): Thermobia Domestica (ncbitaxon:89055) 
2018-01-11 | MSV000081912 | MassIVE
ProteomicsProteomic analysis of trachea and midgut from larvae of Drosophila melanogaster
Total protein was isolated from the trachea and midgut of D. melanogaster 3rd instar larvae and analysed by shotgun proteomics in order to identify the putative carbohydrate-active enzymes.
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) 
2018-01-11 | MSV000081913 | MassIVE
TranscriptomicsBulk RNA-seq of untreated human cell lines from multiple tissues
Bulk RNA-seq profiling of untreated human cell lines derived from blood, breast and bladder tissues (MCF7, MDA-MB-231, KMCB2, Jurkat) to characterise baseline transcriptional differences across cellular contexts.
ORGANISM(S): Homo sapiens 
2026-01-25 | E-MTAB-16514 | biostudies-arrayexpress
ProteomicsMalaria host-parasite iTRAQ proteomics - infection of normal and G6PD-deficient red blood cells by P. falciparum
iTRAQ proteomics of both human host and P. falciparum. Host: human normal red blood cells and G6PD-deficient red blood cells Parasite: 3D7 chloroquine-sensitive P. falciparum; trophozoite stage
ORGANISM(S): Plasmodium Falciparum (ncbitaxon:5833) Homo Sapiens (ncbitaxon:9606) 
2021-07-14 | MSV000087827 | MassIVE
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