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Transcriptomics (2188)
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Genomics (485)
Metabolomics (107)
Unknown (48)
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Organisms

Drosophila melanogaster (671)
Homo sapiens (445)
Mus musculus (346)
Saccharomyces cerevisiae (163)
Arabidopsis thaliana (89)
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Caenorhabditis elegans (39)
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Repository

biostudies-arrayexpress (2594)
pride (1206)
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Tissue

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Disease

Normal (26)
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None (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Invasive Ductal Carcinoma (1)
Renal cancer (1)
Colorectal cancer recurrence-free (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Uncomplicated gonorrhoea (1)
Carotid artery disease: ASYMPTOMATIC high-grade inner carotid artery stenosis (1)
Colon Cancer (1)
Infected (1)

Technology Type

Mass Spectrometry (1207)
Shotgun proteomics (559)
Bottom-up proteomics (249)
Affinity purification coupled with mass spectrometry proteomics (244)
Data-dependent acquisition (194)
Gel-based experiment (77)
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SWATH MS (37)
Top-down proteomics (35)
Mass spectrometry assay (18)
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All-ion fragmentation (10)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
SRM/MRM (10)
NMR spectroscopy (9)
NMR spectroscopy assay (8)
HDMSE (5)
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MSE (4)
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Metaproteomics (3)
Proteogenomics (2)
ESI (1)
DiaPASEF (1)
RNA mass spectrometry (1)
Two Dimensional Polyacrylamide Gel Electrophoresis (1)

Instrument Platform

Illumina NovaSeq 6000 (86)
NextSeq 500 (78)
Illumina HiSeq 2000 (45)
Illumina HiSeq 4000 (38)
Illumina HiSeq 2500 (26)
NextSeq 550 (16)
Axon GenePix 4000B scanning hardware (15)
Illumina MiSeq (13)
Axon- GenePix4000B (10)
GenePix 4000B [Axon Instruments] (10)
NextSeq 2000 (10)
GenePix 4000A [Axon Instruments] (9)
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Other (7)
418 [Affymetrix] (6)
Scanning hardware (6)
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ArrayWoRx Biochip Reader [Applied Precision] (5)
G2565BA DNA microarray scanner [Agilent] (5)
Ultracentrifuge (4)
ScanArray scanning hardware (4)
GenePix Professional 4200A [Axon Instruments] (4)
G2565AA DNA microarray scanner [Agilent] (4)
Spectronic Helios Alpha UV-Vis spectrophotometer (4)
Illumina Genome Analyzer II (4)
BGISEQ-500 (4)
Illumina HiSeq 3000 (4)
PromethION (3)
G2565BA DNA microarray scanner (3)

Publication Date

2013 (511)
2011 (337)
2010 (329)
2025 (270)
2024 (229)
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2026 (161)
2008 (157)
2012 (145)
2015 (133)
2009 (132)
2014 (128)
2019 (110)
2020 (107)
2007 (107)
2018 (90)
2016 (89)
2006 (87)
2005 (84)
2017 (65)
2004 (48)
2003 (10)
2002 (1)

CHEBI ID

CHEBI:16737 (30)
CHEBI:30769 (27)
CHEBI:15891 (26)
CHEBI:16919 (23)
CHEBI:17368 (23)
CHEBI:15428 (22)
CHEBI:17895 (21)
CHEBI:28300 (20)
CHEBI:15354 (20)
CHEBI:15603 (20)
CHEBI:17295 (19)
CHEBI:17596 (19)
CHEBI:18050 (18)
CHEBI:16704 (18)
CHEBI:32816 (18)
CHEBI:16414 (18)
CHEBI:28044 (17)
CHEBI:17154 (17)
CHEBI:17568 (17)
CHEBI:27897 (17)
CHEBI:25094 (16)
CHEBI:17126 (16)
CHEBI:16977 (16)
CHEBI:16467 (16)
CHEBI:17203 (16)
CHEBI:15971 (16)
CHEBI:16015 (16)
CHEBI:17191 (16)
CHEBI:17822 (15)
CHEBI:18186 (15)

Metabolite Name

Creatinine (30)
Creatine (25)
Taurine (24)
EDTA (23)
Hypoxanthine (22)
Glutamine (19)
Choline (18)
Histamine (18)
L-Histidine (17)
Betaine (16)
Adenosine (16)
L-Glutamine (16)
Inosine (16)
Citric acid (15)
Palmitic acid (15)
Xanthine (15)
Glycerophosphocholine (15)
L-Phenylalanine (15)
Glycine (14)
L-Arginine (14)
Spermidine (14)
Guanine (14)
Cytosine (14)
Phosphorylcholine (14)
Phenylalanine (14)
Guanosine (14)
L-Valine (14)
L-Tyrosine (14)
L-Alanine (13)
Uracil (13)

First Public Date

2025 (15)
2023 (15)
2024 (14)
2026 (12)
2014 (8)
2021 (7)
2022 (5)
2019 (4)
2018 (2)
2013 (2)
2020 (1)
2017 (1)
2016 (1)

Classification

bacteria (1)

Modification

N6 (3)
2x(15)N labeled L-lysine (2)
N6-dimethyl-L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
Not available (1)

Study status

Withdrawn (1)
Completed (1)

Study type

Transcription profiling by array (1101)
ChIP-chip by tiling array (455)
ChIP-seq (338)
RNA-seq of coding RNA (185)
Comparative genomic hybridization by array (83)
ChIP-chip by array (75)
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RNA-seq of coding RNA from single cells (56)
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Other (31)
Transcription profiling by tiling array (26)
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Unknown experiment type (9)
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CUT&RUN (7)
RNA-seq of total RNA (7)
Single nucleus RNA sequencing (6)
RNA-seq of non coding RNA (6)
Cell line - High-throughput sequencing (5)
RNAi profiling by array (5)
ATAC-seq (4)
Hi-C (4)
MNase-seq (3)
Human - High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
RIP-seq (3)
ScATAC-seq (3)
Genotyping by high throughput sequencing (3)

Release Date

2013 (513)
2011 (337)
2010 (329)
2008 (157)
2012 (145)
2009 (132)
2014 (118)
2015 (114)
2007 (107)
2006 (86)
2005 (83)
2016 (72)
2023 (51)
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2004 (48)
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2021 (46)
2024 (44)
2020 (44)
2018 (34)
2017 (30)
2019 (27)
2026 (18)
2003 (10)
2002 (1)

Lab affiliation

School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (14)
School of Biological Sciences, Nanyang Technological University (10)
School of Biological Sciences, Nanyang Technological University, Singapore (10)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (9)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (6)
EDyP (5)
University of Oxford (5)
Cleveland Clinic Lerner Research Institute Cardiovascular and Metabolic Sciences (4)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (4)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (4)
ETHZ IMSB (4)
Head of the Curie Institute Mass Spectrometry Platform (4)
Institute for Genetics and CECAD Research Center, University of Cologne, Cologne, Germany (4)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (4)
Molecular Genetics, RPTU Kaiserslautern (4)
UCSF (4)
VIB-UGent Center for Medical Biotechnology (4)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (3)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (3)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (3)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel (3)
Institut de recherches cliniques de Montréal (IRCM), Translational proteomics (3)
Institute of Biochemistry ETHZ (3)
Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany (3)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany (3)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, China (3)
Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (3)

Location

France (1)

Keyword

Intestinal NET (1)
Somatostatin analogues (1)
Tryptophan hydroxylase inhibitor (1)
Intestinal microbiota, microbial genes, oncology (1)
Lanreotide (1)

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Untargeted LC-MS to compare blood collection tube and processing time – HILIC & C18

Not available

ORGANISM(S): Homo sapiens

ST001099 | MetabolomicsWorkbench

DNA profiling of serous ovarian and Fallopian tube carcinomas with array CGH and MLPA

Primary serous ovarian carcinoma (OVCA) and serous Fallopian tube carcinoma (FTC), both belonging to the BRCA-linked tumour spectrum, share many properties and are treated similarly. However, a detailed molecular comparison has been lacking. We hypothesized that comparative genomic studies of serous...

ORGANISM(S): Homo sapiens

2008-07-08 | E-GEOD-12040 | biostudies-arrayexpress

Expression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge (PAX.NGR and EDTA)

To determine differential gene expression in peripheral blood of asthmatic individuals undergoing allergen inhalation challenge, post-challenge compared to pre-challenge Blood was collected immediately prior to, and two hours after challenge The 8 PAXgene non-globin reduced (PAX.NGR) samples were co...

ORGANISM(S): Homo sapiens

2012-01-26 | E-GEOD-34160 | biostudies-arrayexpress

Single-tube Linear DNA amplification (LinDA) for robust ChIP-seq

Genome-wide profiling of transcription factors based on massive parallel sequencing of immunoprecipitated chromatin (ChIP-seq) requires nanogram amounts of DNA. Here we describe a high-fidelity, single-tube linear DNA amplification method (LinDA) for ChIP-seq and reChIP-seq with picogram DNA amounts...

ORGANISM(S): Homo sapiens

2011-10-11 | E-GEOD-32332 | biostudies-arrayexpress

Towards clinical applications of blood-born miRNA signatures: The influence of the anticoagulant EDTA on miRNA abundance

Circulating microRNAs (miRNAs) from blood are increasingly recognized as biomarker candidates for human diseases. Clinical routine settings frequently include blood sampling in tubes with EDTA as anticoagulant without considering the influence of phlebotomy on the overall miRNA expression pattern. W...

ORGANISM(S): Homo sapiens

2015-12-31 | E-GEOD-73401 | biostudies-arrayexpress

Program specificity for Ptf1a in PancreasM-BM- versusM-BM- Neural Tube DevelopmentM-BM- correlates with distinctM-BM- collaborating cofactors and chromatin accessibility

Ptf1a is a lineage-specific basic-helix-loop-helix transcription factor critical in the development of both the pancreas and nervous system. How one transcription factor controls diverse programs of gene expression is a fundamental question in developmental biology. To uncover molecular strategies f...

ORGANISM(S): Mus musculus

2013-08-15 | E-GEOD-47459 | biostudies-arrayexpress

Towards clinical applications of blood-born miRNA signatures: The influence of the anticoagulant EDTA on miRNA abundance

ORGANISM(S): Homo sapiens

2015-12-31 | GSE73401 | GEO

TUBE pulldown of K63 ubiquitylated proteins from phagosomes

TUBE TAB2 pull down of K63 polyubiquitylated proteins from phagosomes isolated from mouse macrophages.

ORGANISM(S): Mus musculus (Mouse)

2019-03-22 | PXD010478 | Pride

The effectiveness of cooling conditions on temperature of canine EDTA whole blood samples.

Not available

S-EPMC5131627 | biostudies-literature

Expression profiles of EDTA-dissociated colon epithelial cells of wild-type mice and vil-Cre-Bcl9-/-/Bcl9l-/- mice.

To assess potential changes in Wnt signaling more comprehensively, EDTA-dissociated colon epithelial cells from three pools of wild-type and Bcl9/Bcl9l-mutant mice were subjected to an exploratory comparative gene expression profiling. Total RNA of three samples of EDTA-dissociated colon epithelial ...

ORGANISM(S): Mus musculus

2010-09-01 | E-GEOD-21549 | biostudies-arrayexpress

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