Equidae - OmicsDI

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Unknown (53)
Transcriptomics (25)
Metabolomics (10)
Genomics (6)
Proteomics (5)

Organisms

Equus caballus (20)
Elizabethkingia anophelis (5)
Plasmodium yoelii yoelii 17XNL (5)
Colwellia psychrerythraea 34H (5)
Salmonella enterica subsp. enterica serovar Typhimurium str. ST1489 (5)
uncultured zooxanthellae Symbiodinium (5)
Oecophyllibacter saccharovorans (5)
Formica sp. BOLD:AAA1469 (5)
Alytes obstetricans (5)
Anemonia sulcata (5)
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 (5)
Fructilactobacillus sanfranciscensis DSM 20451 (5)
Streptococcus thermophilus MTCC 5460 (5)
Rhipicephalus microplus (5)
Wolbachia endosymbiont of Schlechtendalia chinensis (5)
Oryza sativa Indica Group x Oryza nivara (5)
Mycobacteroides abscessus subsp. abscessus (5)
Stichodactyla haddoni (5)
Campylobacter jejuni subsp. jejuni ATCC 33560 (5)
Geobacter (5)
fungal sp. 5OL6-6PL1 (5)
Enterococcus faecium DO (5)
Gorilla gorilla (5)
Campylobacter coli RM2228 (5)
Hyphomicrobium sp. MC8b (5)
Lodderomyces parapsilosis (5)
Mus musculus (3)
Sus scrofa (1)
Drosophila melanogaster (1)
Homo sapiens (1)

Organisms

Equus quagga burchellii (1)
Streptococcus equi subsp. equi 4047 (1)
Equidae (1)

Repository

biostudies-arrayexpress (26)
MetaboLights (10)
pride (5)
ENA (5)

Tissue

Bone (2)
Long bone (1)
Hair (1)
Tooth (1)
Tooth enamel (1)
Skin (1)

Disease

Normal (1)

Technology Type

Mass Spectrometry (5)
NMR spectroscopy (4)
Mass spectrometry (4)
Shotgun proteomics (4)
NMR spectroscopy assay (2)
Data-dependent acquisition (1)
Bottom-up proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (4)
Nuclear Magnetic Resonance (NMR) - (4)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
University College Dublin Animal Research Ethics Committee approval, a licence from the Department of Health (B100/3525) and explicit owner/trainer informed consent were obtained for the use of all horses and procedures in this study. (1)
Flexercell FX-4000C (1)
Not applicable (1)
AB SOLiD System (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Nuclear Magnetic Resonance (NMR) (1)
Bruker (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (7)
2026 (5)
2016 (5)
2014 (4)
2024 (3)
2018 (3)
2023 (2)
2020 (2)
2010 (2)
2021 (2)
2015 (1)
2013 (1)
2011 (1)
2009 (1)
2007 (1)
2019 (1)

CHEBI ID

CHEBI:16737 (4)
CHEBI:16919 (4)
CHEBI:15611 (3)
CHEBI:16344 (3)
CHEBI:30751 (3)
CHEBI:15428 (3)
CHEBI:17549 (3)
CHEBI:15891 (3)
CHEBI:15366 (3)
CHEBI:32816 (3)
CHEBI:16347 (3)
CHEBI:17295 (3)
CHEBI:18089 (3)
CHEBI:30769 (3)
CHEBI:68566 (2)
CHEBI:17301 (2)
CHEBI:50129 (2)
CHEBI:16709 (2)
CHEBI:17170 (2)
CHEBI:16236 (2)
CHEBI:37084 (2)
CHEBI:15676 (2)
CHEBI:16977 (2)
CHEBI:30794 (2)
CHEBI:17754 (2)
CHEBI:15344 (2)
CHEBI:35697 (2)
CHEBI:7916 (2)
CHEBI:17750 (2)
CHEBI:18050 (2)

Metabolite Name

Glycine (4)
Creatinine (4)
Creatine (4)
L-Phenylalanine (4)
L-Lactic acid (3)
Pyruvic acid (3)
D-Glucose (3)
Formic acid (3)
L-Alanine (3)
Betaine (3)
Guanidoacetic acid (3)
Acetic acid (3)
L-Histidine (3)
Citric acid (3)
3-Hydroxybutyric acid (3)
5-Aminolevulinic acid (3)
L-Glutamine (3)
L-Carnitine (3)
L-Valine (3)
L-Leucine (3)
L-Tyrosine (3)
Dimethyl sulfone (2)
Ethanol (2)
Acetoacetic acid (2)
Glucaric acid (2)
Acetate (2)
N-Nitrosodimethylamine (2)
Methylsuccinic acid (2)
3-Hydroxyisovaleric acid (2)
Glycerol (2)

First Public Date

2017 (2)
2024 (1)
2022 (1)
2013 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (8)
Animal - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2017 (9)
2024 (7)
2022 (7)
2016 (6)
2023 (5)
2020 (5)
2014 (5)
2019 (5)
2026 (4)
2025 (4)
2013 (4)
2021 (4)
2018 (3)
2015 (3)
2009 (3)
2010 (2)
2011 (1)
2007 (1)
2002 (1)

Lab affiliation

PRBB, Institute of Evolutionary Biology (UPF-CSIC), Dr. Aiguader 88, 8003 Barcelona, Spain Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010, Barcelona, Spain Centro Nacional de Análisis Genómico (CNAG), Baldiri i Reixac 4, 08028 Barcelona, Spain Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain (1)
Section for Molecular Ecology and Evolution, Biomolecular Palaeoanthropology Lab, Globe Institute, University of Copenhagen (1)
Museum national d'Histoire naturelle (1)
The Globe Institute, University of Copenhagen (1)
Globe Institute, University of Copenhagen (1)

Tags

xref:PubMed:19325880 (1)
pathogen (1)
pathogen:bacterium (1)

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Equidae

Vaginal and Uterine Microbiota of Healthy Maiden Mares During Estrus

PRJNA1121906 | ENA

Ancient tooth enamel proteomes to help understand post mortem protein degradation over millions of years

The tooth enamel proteome is enzymatically broken down during development, which leads to a heterogenous distribution of remaining peptides of a protein sequence in a grown individual's enamelome. After death of the organism, the heterogeneous distribution of remaining peptides may be enhanced, as t...

ORGANISM(S): Equidae Proboscidea <placentals>

2025-05-06 | PXD048972 | Pride

The Equidae from Cooper's D, an early Pleistocene fossil locality in Gauteng, South Africa.

Not available

S-EPMC6525595 | biostudies-literature

Uveitis and blindness in a closed herd of Equidae following leptospiral infection.

Not available

S-EPMC11743373 | biostudies-literature

Natural killer cell receptor genes in the family Equidae: not only Ly49.

Not available

S-EPMC3665701 | biostudies-literature

Twelve toll-like receptor (TLR) genes in the family Equidae - comparative genomics, selection and evolution.

Not available

S-EPMC10998774 | biostudies-literature

Genetic diversity, evolution and selection in the major histocompatibility complex DRB and DQB loci in the family Equidae.

Not available

S-EPMC7525986 | biostudies-literature

Equidae

Horse and donkey centromeres

PRJNA385275 | ENA

The effect of changing haylages of differing chemical composition on the equid metabonome

Rapid changes between feeds can cause dysbiosis and colic. The metabolic consequences of changing between haylages is currently unknown. Objectives Characterise urinary and faecal metabonomics in ponies transitioned between haylages varying in botanical composition and physiological age and to deter...

2026-09-29 | MTBLS15865 | MetaboLights

Welfare of equidae during transport.

Not available

S-EPMC9449990 | biostudies-literature

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99 Results

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