Sort   by:  
 Page size 
TranscriptomicsExpression analysis of N. europaea (ATCC 19718) wildtype and pFur::Kan mutant grown in Fe-replete and Fe-limited media
Investigation of whole genome gene expression level changes in a Nitrosomonas europaea (ATCC 19718) wildtype and pFur::Kan mutant [kanamycin resistance cassette insertion in the promoter region of the fur gene (NE0616)] strains grown in Fe-replete and Fe-limited media. The Nitrosomonas europaea (ATC...
ORGANISM(S): Nitrosomonas europaea ATCC 19718 
2010-06-20 | E-GEOD-18709 | biostudies-arrayexpress
ProteomicsSulfur Starvation Induces an Fe-Replete Response and Attenuates Virulence Pathways in Pseudomonas aeruginosa PAO1
Specific bacteria grown with alternative sulfur sources leads to metabolic reprogramming that includes the expression of sulfur-scavenging and antioxidant genes. To determine the detailed metabolic effect of sulfur starvation, P. aeruginosa PAO1 was grown in sulfur-free media alone and with the addi...
ORGANISM(S): Pseudomonas aeruginosa ATCC 700888 Bacteria 
2025-11-10 | PXD062994 | Pride
Sulfur Pseudomonas aeruginosa Oxidative stress Fe-replete Virulence pathways 
TranscriptomicsExpression analysis of N. europaea (ATCC 19718) wildtype and pFur::Kan mutant grown in Fe-replete and Fe-limited media
Investigation of whole genome gene expression level changes in a Nitrosomonas europaea (ATCC 19718) wildtype and pFur::Kan mutant [kanamycin resistance cassette insertion in the promoter region of the fur gene (NE0616)] strains grown in Fe-replete and Fe-limited media. The Nitrosomonas europaea (ATC...
ORGANISM(S): Nitrosomonas europaea ATCC 19718 
2009-11-10 | GSE18709 | GEO
TranscriptomicsSystems and trans-system level analysis identifies conserved Fe-deficiency responses in the plant lineage
We used RNA-Seq to compare the transcriptomes of Fe-replete vs. Fe-deficient vs. Fe-limited Chlamydomonas wild-type cells. Our RNA-Seq data revealed 90 and 49 genes to be specifically expressed under hetero-phototrophic and phototrophic conditions, respectively. Around 30 genes represent putative F...
ORGANISM(S): Chlamydomonas reinhardtii 
2012-06-18 | E-GEOD-35305 | biostudies-arrayexpress
GenomicsNitrosomonas europaea ATCC 19718
Expression analysis of N. europaea (ATCC 19718) wildtype and pFur::Kan mutant grown in Fe-replete and Fe-limited media
PRJNA121505 | ENA
TranscriptomicsIdentifying reference genes with stable expression from high throughput sequence data
Genes that are constitutively expressed across multiple environmental stimuli are crucial to quantifying differentially expressed genes, particularly when employing quantitative reverse transcriptase polymerase chain reaction (RT-qPCR) assays. However, the identification of these potential reference...
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2013-01-01 | E-GEOD-40509 | biostudies-arrayexpress
TranscriptomicsTranscriptional response of the marine pennate diatom Phaeodactylum tricornutum to Fe limitation
Diatoms, which are responsible for up to 40% of the 45 to 50 billion metric tons of organic carbon production each year in the sea, are particularly sensitive to Fe stress. Here we describe the transcriptional response of the pennate diatom Phaeodactylum tricornutum to Fe limitation using a partial ...
ORGANISM(S): Phaeodactylum tricornutum 
2010-05-27 | E-GEOD-8675 | biostudies-arrayexpress
ProteomicsSubcellular proteomics for determining iron limited remodeling of plastids in the model diatom Thalassiosira pseudonana
Diatoms are important primary producers in the world’s oceans, yet their growth is constrained in large regions by low bioavailable iron (Fe). Low Fe-induced limitation of primary production is due to requirements for Fe in components of essential metabolic pathways including photosynthesis and othe...
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2023-08-04 | PXD040824 | Pride
Plastid Organelle Iron limitation Diatom Ocean 
UnknownSulfur starvation induces an Fe-replete response and attenuates virulence pathways in Pseudomonas aeruginosa PAO1.
Not available
S-EPMC12581299 | biostudies-literature
MetabolomicsHierarchical Carbon Metabolism in Iron-Deficient Bacteria Favors Iron-Scavenging Strategy

High-affinity iron (Fe) scavenging compounds, or siderophores, are widely employed by soil bacteria to survive scarcity in bioavailable Fe. Siderophore biosynthesis relies on cellular carbon metabolism, despite reported decrease in both carbon uptake and Fe-containing metabolic proteins in Fe-def...

2020-12-05 | MTBLS1715 | MetaboLights
Sort   by:  
 Page size