Fm - OmicsDI

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Unknown (19213)
Proteomics (401)
Genomics (385)
Transcriptomics (380)
Metabolomics (38)
Other (4)
Genomic (2)
Multiomics (2)
Methylation profiling (1)

Organisms

Homo sapiens (174)
Mus musculus (91)
Arabidopsis thaliana (26)
Salmo salar (16)
Saccharomyces cerevisiae (14)
Rattus norvegicus (13)
Sus scrofa (7)
Caenorhabditis elegans (5)
Drosophila melanogaster (5)
Oryza sativa (5)
Gallus gallus (4)
Bos taurus (3)
Danio rerio (3)
Phalaenopsis aphrodite subsp. formosana (2)
Macaca nemestrina (2)
Dictyostelium discoideum (2)
Fundulus heteroclitus (2)
Plasmodium berghei (2)
Schizosaccharomyces pombe (2)
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Thermococcus kodakarensis KOD1 (1)
Sinorhizobium fredii NGR234 (1)
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Sinorhizobium fredii (1)
Eutrema salsugineum (1)
Stenotrophomonas maltophilia (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Drosophila sechellia (1)
Dermacentor andersoni (1)
Euphorbia esula (1)

Organisms

root metagenome (80)
Homo sapiens (28)
Mus musculus (15)
Arabidopsis thaliana (10)
Salmo salar (6)
Gallus gallus (5)
Phaeodactylum tricornutum (4)
Solanum lycopersicum (4)
Rattus norvegicus (4)
Orbicella faveolata (3)
Oncorhynchus mykiss (3)
Sparus aurata (2)
Lactarius subdulcis (2)
Pagrus major (2)
Drosophila melanogaster (2)
sediment metagenome (2)
Oryza sativa (2)
human gut metagenome (2)
Penicillium camemberti FM 013 (1)
Rhizophora apiculata (1)
[Ashbya] aceris (nom. inval.) (1)
Gnathostomata (1)
Thalassiosira pseudonana CCMP1335 (1)
Pinus radiata (1)
Exophiala spinifera (1)
Rhododendron (1)
Pyropia haitanensis (1)
Bruguiera gymnorhiza (1)
Ericerus pela (1)
Breviolum minutum (1)

Repository

pride (369)
biostudies-arrayexpress (348)
ENA (338)
geo (63)
MetaboLights (33)
MassIVE (21)
EGA (19)
iProX (9)
GNPS (4)
dbGaP (2)
jPOST (2)
PanoramaPublic (2)
GPMDB (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (83)
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Brain (18)
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Blood (8)
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Blood cell (6)
T cell (6)
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HeLa cell (5)
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Stomach (4)
Spleen (4)
Jejunum (3)
Duodenum (3)
Endothelial cell (3)
Intestine (3)
Pancreas (3)
Embryonic stem cell (3)
Bacterial cells (1)

Disease

Colon cancer (16)
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Disease free (8)
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Brain glioblastoma multiforme (4)
Cervix carcinoma (4)
Brain cancer (4)
Type 2 diabetes mellitus (4)
Brain small vessel disease (3)
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Cardiovascular system disease (2)
Acute myeloid leukemia (2)
COVID-19 (2)
Not Available (1)
Perinatal necrotizing enterocolitis (1)
Type 1 diabetes mellitus 2 (1)
Intestinal infectious disease (1)
Charlevoix-Saguenay spastic ataxia (1)
Motor neuron disease (1)
Inflammatory bowel disease 7 (1)
Neutropenia (1)
Aphthous stomatitis (1)
Temporal lobe epilepsy (1)
Cardiomyopathy (1)

Technology Type

Mass Spectrometry (370)
Shotgun proteomics (213)
Bottom-up proteomics (67)
Data-dependent acquisition (38)
Affinity purification coupled with mass spectrometry proteomics (35)
Mass spectrometry (27)
Data-independent acquisition (24)
Top-down proteomics (21)
Gel-based experiment (17)
HDMSE (13)
SWATH MS (13)
SRM/MRM (8)
MSE (5)
DiaPASEF (5)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (4)
NMR spectroscopy (3)
All-ion fragmentation (3)
Affinity proteomics (2)
ESI (1)
SomaScan affinity proteomics (1)
Mass spectrometry imaging (1)
Immunopeptidomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (10)
Liquid Chromatography MS - positive - reverse phase (10)
Q Exactive (8)
NextSeq 500 (6)
Illumina HiSeq 2500 (5)
Axon- GenePix4000B (3)
Illumina HiSeq 4000 (3)
GenePix 4000B [Axon Instruments] (2)
NextSeq 550 (2)
Illumina HiSeq 2000 (2)
Bruker maXis ESI Quadrupole TOF (2)
Orbitrap Fusion (2)
6560 Q-TOF LC/MS (2)
LTQ Velos (2)
LTQ Orbitrap Velos (2)
LTQ Orbitrap XL (2)
Agilent SureScan High-Resolution DNA Microarray Scanner (1)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
Agilent 7890 A - 5975 C GC/MS (1)
Instrument (1)
Microflex (1)
Autoflex (1)
ImpactHD (Bruker Daltonics) (1)
Synapt G2-S HDMS (1)
Synapt G2 HDMS (1)
TimsTOF Pro (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)

Publication Date

2021 (71)
2013 (63)
2014 (60)
2025 (60)
2023 (55)
2022 (54)
2026 (51)
2020 (49)
2010 (47)
2019 (43)
2011 (41)
2012 (39)
2016 (34)
2015 (33)
2024 (32)
2018 (32)
2017 (30)
2008 (21)
2009 (13)
2007 (8)
2006 (7)
2005 (1)

CHEBI ID

CHEBI:30769 (12)
CHEBI:15756 (12)
CHEBI:15428 (11)
CHEBI:17822 (11)
CHEBI:15741 (11)
CHEBI:17992 (9)
CHEBI:28842 (9)
CHEBI:27266 (9)
CHEBI:16811 (9)
CHEBI:24898 (9)
CHEBI:25017 (9)
CHEBI:16865 (8)
CHEBI:32816 (8)
CHEBI:6650 (8)
CHEBI:28044 (8)
CHEBI:24266 (7)
CHEBI:33508 (7)
CHEBI:26078 (7)
CHEBI:16015 (7)
CHEBI:30887 (7)
CHEBI:16704 (7)
CHEBI:16335 (7)
CHEBI:16449 (7)
CHEBI:22660 (7)
CHEBI:28300 (7)
CHEBI:26271 (7)
CHEBI:18237 (7)
CHEBI:25094 (7)
CHEBI:18186 (7)
CHEBI:17626 (6)

Metabolite Name

Glycine (10)
Serine (9)
Valine (7)
Leucine (7)
Succinic acid (7)
Isoleucine (7)
Adenosine (7)
Sucrose (7)
Kynurenic acid (6)
Methionine (6)
Citric acid (6)
Quinic acid (6)
Malic acid (6)
Tyrosine (6)
Threonine (6)
Phenylalanine (6)
Glutamine (6)
Uracil (6)
Ornithine (6)
Arabitol (5)
Pyruvic acid (5)
Mannitol (5)
Shikimic acid (5)
Cholesterol (5)
Nicotinamide (5)
Isocitric acid (5)
Lysine (5)
Asparagine (5)
Spermidine (5)
Alanine (5)

First Public Date

2020 (98)
2024 (42)
2025 (37)
2026 (32)
2023 (26)
2022 (24)
2021 (16)
2019 (16)
2014 (13)
2018 (11)
2015 (8)
2017 (7)
2016 (5)
2013 (3)

Classification

fungi (1)
bacteria (1)

Modification

Not available (3)
15.994915 (2)
57.021464 (2)
N6 (1)
N6-dimethyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (226)
RNA-seq of coding RNA (44)
ChIP-seq (19)
Comparative genomic hybridization by array (9)
Unknown experiment type (7)
RNA-seq of non coding RNA (7)
Other (5)
Methylation profiling by array (5)
Genotyping by array (4)
High-throughput sequencing (3)
Transcription profiling by RT-PCR (3)
MicroRNA profiling by array (3)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by tiling array (2)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)

Release Date

2022 (2208)
2021 (2072)
2023 (2028)
2025 (1902)
2024 (1650)
2020 (1646)
2019 (1267)
2018 (1050)
2017 (915)
2016 (832)
2015 (761)
2014 (648)
2013 (457)
2012 (396)
2011 (362)
2010 (310)
2026 (264)
2009 (207)
2008 (168)
2007 (95)
2006 (90)
2005 (58)
2003 (41)
2004 (39)
2002 (28)
2001 (18)
2000 (17)
1999 (13)
1998 (9)
1997 (8)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (16)
Massachusetts Institute of Technology (10)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (4)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (4)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (4)
Department of Biological Engineering, Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (3)
Metabolic Research Laboratories, University of Cambridge (3)
Microbial Evolution Laboratory, Centro de Astrobiologia (CSIC-INTA), 28850 Torrejón de Ardoz, Madrid, Spain (3)
USDA ARS; Boyce Thompson Institute; Cornell University (3)
Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany (3)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (3)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (2)
Biological Engineering (2)
Massachusetts Institute of Technology, Department of Biological Engineering, David H Koch Institute for Integrative Cancer Research (2)
Department of Biological Engineering, MIT (2)
Department of Immunology and Cell Biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke (2)
Department of Immunology and Cell Biology, Sherbrooke, QC, Canada (2)
College of Life Sciences, University of Dundee (2)
Sequence database group (2)
Basic Sciences, College of Veterinary Medicine (2)
Université de Sherbrooke (2)
Biological Engineering, MIT (2)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
Department of Immunology and Cell biology, Université de Sherbrooke, 3201, Jean-Mignault, Sherbrooke, Québec, J1E 4K8, Canada (2)
Laboratory for Functional Genome Analysis LAFUGA, Gene Center, LMU München, München, Germany, Feodor-Lynen-Straße 25, 81377 München (2)
Laboratory of Biomedical Technologies, Agenzia Nazionale per le Nuove Tecnologie, l'Energia e lo Sviluppo Economico Sostenibile (ENEA), Rome, Italy (2)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (2)
Wellcome Trust MRC Institute of Metabolic Science (2)
Department of Anatomy and Cell Biology, Université de Sherbrooke (2)
New York University, Department of Biology, New York, USA (2)

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Paraburkholderia fungorum strain:FM-2

Paraburkholderia fungorum strain:FM-2 Genome sequencing and assembly

PRJNA738348 | ENA

Exophiala spinifera strain:FM

Exophiala spinifera strain:FM Genome sequencing and assembly

PRJNA1036651 | ENA

Lactarius subdulcis strain:FM

Lactarius subdulcis FM Transcriptome - Lacsub FM

PRJNA1360492 | ENA

Lactiplantibacillus plantarum strain:FM-LP-BC17

Lactiplantibacillus plantarum strain:FM-LP-BC17 Genome sequencing

PRJNA1311787 | ENA

Lactarius subdulcis strain:FM

Lactarius subdulcis FM Standard Draft genome sequencing

PRJNA1080822 | ENA

Gene regulation during colitis-associated colon cancer in Muc1 hematopoietic KO chimeric mice

MUC1 is a tumor-associated antigen that is aberrantly expressed in cancer and inflammatory bowel disease (IBD). Even though immune cells express low MUC1 levels, their modulations of MUC1 are important in tumor progression. Consistent with previous clinical data that show increased myeloid-derived s...

ORGANISM(S): Mus musculus

2013-05-30 | E-GEOD-47487 | biostudies-arrayexpress

Equine tendon LC-MSMS, C4PR_LIV

the aim of this study was to isolate, characterise and compare the proteome of the IFM and fascicular matrix (FM) in the equine superficial digital flexor tendon (SDFT). We hypothesised that the proteomic profile would differ between the FM and the IFM, with greater complexity and faster turnover in...

ORGANISM(S): Equus caballus (Horse)

2016-02-08 | PXD002979 | Pride

Pinus radiata cultivar:FM-4-F4

Pinus radiata FM-4-F4 Transcriptome - PradFM-4-F4

PRJNA455455 | ENA

Pediococcus acidilactici strain:FM-Pa-JXM94

Pediococcus acidilactici strain:FM-Pa-JXM94 Genome sequencing

PRJNA1311321 | ENA

Molecular Effects of Developmental FM 550 Exposure in Wistar Rat Fetal Forebrain

Firemaster® 550 (FM 550) is a flame retardant (FR) mixture that has become one of the most commonly used FRs in foam-based furniture and baby products. Human exposure to this commercial mixture, comprised of brominated and organophosphate components, is widespread. We have repeatedly shown that deve...

ORGANISM(S): Rattus norvegicus

2018-02-28 | GSE108965 | GEO

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20425 Results

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