Franz P P - OmicsDI

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Unknown (852)
Transcriptomics (40)
Proteomics (36)
Genomics (12)
Metabolomics (2)
Genomic (1)
Multiomics (1)

Organisms

Schizophyllum commune H4-8 (33)
Mycobacterium tuberculosis SP7 (33)
Oryza sativa Japonica Group (33)
Candidatus Endoriftia persephonae (33)
Mycobacterium tuberculosis SP10 (33)
Mycobacterium tuberculosis SP13 (33)
Mycobacterium tuberculosis SP22 (33)
Chlamydomonas reinhardtii (33)
Pyricularia oryzae P131 (33)
Enterococcus mundtii CRL35 (33)
Oncorhynchus tshawytscha (33)
Pseudomonas canadensis (33)
Strongylocentrotus purpuratus (33)
Influenza A virus (A/California/04/2009(H1N1)) (33)
Homo (33)
Pseudomonas aeruginosa PAO1H2O (33)
Human alphaherpesvirus 1 strain 17 (33)
Quercus petraea (33)
Canis lupus (33)
Mycobacterium tuberculosis SP1 (33)
Homo sapiens (29)
Mus musculus (14)
Saccharomyces cerevisiae SK1 (2)
Agrobacterium tumefaciens (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Sus scrofa domesticus (1)
Macaca mulatta (1)
Pan troglodytes (1)
Candida albicans (1)
Vibrio cholerae (1)

Repository

biostudies-arrayexpress (43)
pride (33)
EGA (9)
MassIVE (3)
MetaboLights (2)
dbGaP (1)

Tissue

Cell culture (5)
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Disease

Kidney disease (1)
Primary open angle glaucoma (1)
Heart failure (1)
Malignant neoplasm of ovary (1)
Bladder transitional cell carcinoma (1)
Disease free (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (12)
Bottom-up proteomics (4)
Illumina MiSeq (2)
Mass spectrometry (2)
Data-independent acquisition (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
DiaPASEF (1)
Gel-based experiment (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina HiSeq 2000 (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion Lumos (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - alternating (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2015 (9)
2012 (9)
2023 (8)
2022 (7)
2014 (6)
2009 (5)
2010 (4)
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2021 (4)
2013 (3)
2019 (3)
2026 (3)
2016 (2)
2011 (2)
2008 (2)
2017 (2)
2018 (2)
2007 (1)
2006 (1)

CHEBI ID

CHEBI:63253 (1)
CHEBI:62194 (1)
CHEBI:71394 (1)
CHEBI:139108 (1)
CHEBI:61425 (1)
CHEBI:48681 (1)
CHEBI:28137 (1)
CHEBI:27537 (1)
CHEBI:28935 (1)
CHEBI:24549 (1)
CHEBI:28706 (1)
CHEBI:28264 (1)
CHEBI:28599 (1)
CHEBI:104362 (1)
CHEBI:104012 (1)
CHEBI:61958 (1)
CHEBI:42465 (1)
CHEBI:71316 (1)
CHEBI:62012 (1)
CHEBI:26900 (1)
CHEBI:44800 (1)
CHEBI:61396 (1)
CHEBI:63251 (1)
CHEBI:61125 (1)
CHEBI:61191 (1)
CHEBI:143010 (1)
CHEBI:50577 (1)
CHEBI:45075 (1)
CHEBI:61508 (1)
CHEBI:68471 (1)

Metabolite Name

D-carnitinyl-CoA (1)
Crotonobetainyl-CoA (1)
Adenosine thiamine triphosphate (1)
6-hydroxymethyl-dihydropterin pyrophosphate (1)
Hexadecanoyl-phosphate (n-C16:0) (1)
Psicoselysine (1)
Ferric 2,3-dihydroxybenzoylserine (1)
Dihydromonapterin (1)
Tetradecenoate (n-C14:1) (1)
L-alanine-L-glutamate (1)
L-alanine-D-glutamate (1)
Cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (1)
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran (1)
5'-deoxyribose (1)
Octanoate (protein bound) (1)
3-Aminoacrylate (1)
Cyclic pyranopterin monophosphate (1)
L-ascorbate-6-phosphate (1)
Dehydroglycine (1)
Gamma-glutamyl-gamma aminobutyric acid (1)
3-keto-L-gulonate-6-phosphate (1)
2,3-dihydroxycinnamic acid (1)
Cis-3-(3-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol (1)
3-(3-hydroxy-phenyl)propionate (1)
Hexadecenoate (n-C16:1) (1)
D-Glycero-D-manno-heptose 7-phosphate (1)
Octanoate (n-C8:0) (1)
2-Succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (1)
6,7-Dihydropteridine (1)
L-Allo-threonine (1)

Study type

Transcription profiling by array (33)
ChIP-seq (3)
Methylation profiling by array (3)
Unknown experiment type (2)
Other (1)
RNA-seq of coding RNA (1)

Release Date

2021 (101)
2023 (99)
2022 (96)
2025 (90)
2020 (90)
2024 (78)
2018 (63)
2019 (46)
2017 (33)
2016 (31)
2015 (31)
2014 (24)
2012 (21)
2013 (16)
2010 (15)
2009 (14)
2011 (12)
2026 (12)
2008 (9)
2007 (4)
2006 (3)
2005 (2)
2003 (2)
2002 (1)
2001 (1)
1999 (1)

Lab affiliation

Faculty of Biology & Biotechnology Ruhr-University Bochum D-44780 Bochum Germany (2)
Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany (2)
University of Utah, School of Biological Sciences Salt Lake City, Utah, U.S.A. (1)
Gene Center, LMU Munich (1)
Eberhard Karls University Tübingen Interfaculty Institute of Microbiology and Infection Medicine (IMIT) (1)
„BIOCEV – Biotechnology and Biomedicine Centre of the Academy of Sciences and Charles University“ (CZ.1.05/1.1.00/02.0109) (1)
Chemistry, Fitzgerald, Duke university, USA (1)
Spatial Proteomics Lab, Max Delbrück Center for Molecular Medicine Berlin, Germany (1)
University Hospital Bonn, Institute of Medical Microbiology, Immunology and Parasitology, Bonn, Germany (1)
Interfaculty Institute for Cell Biology Department of Immunology University of Tübingen Auf der Morgenstelle 15 72076 Tübingen Germany (1)
Junior Research Group Infection Biology of Salmonella Helmholtz Centre for Infection Research Inhoffenstraße 7 38124 Braunschweig Germany (1)
Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany Gene and RNA Therapy Center (GRTC), Faculty of Medicine, University of Tübingen, Tübingen, Germany iFIT Cluster of Excellence (EXC2180) "Image-Guided and Functionally Instructed Tumor Therapies, University of Tübingen, Tübingen, Germany (1)
Max Delbrueck Center, Berlin, Germany Berlin Institute of Health, Berlin, Germany (1)
Eberhard Karls University Tübingen Faculty of Science, Interfaculty Institute of Cell Biology Auf der Morgenstelle 15 72076 Tübingen Germany (1)
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark (1)
Chemistry, Fitzgerald, Duke University, USA (1)
Institute of Biochemistry II, Medical Faculty, University of Cologne, Joseph-Stelzmann-Str. 52, 50931 Köln, Germany; Center for Molecular Medicine Cologne, University of Cologne, Robert-Koch-Str. 21, 50931 Köln, Germany (1)
Faculty of Biology and Biotechnology Ruhr-University Bochum Bochum, 44780, Germany (1)
Center for Plant Molecular Biology (ZMBP) University of Tübingen Tübingen, Germany (1)
University of Halle-Wittenberg Institute for Biology – General Genetics Weinbergweg 10 06120 Halle (Saale) Germany (1)
Max-Planck-Institute of Molecular Plant Physiology, Golm, Germany (1)
Faculty of Biology & Biotechnology Ruhr-University Bochum D-44780 Bochum (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Institute for Genetics, University of Cologne, Cologne, Germany (1)
CNIO (1)
Institute of Pathology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany (1)
Institute Krems Bioanalytics, IMC University of Applied Sciences, 3500 Krems, Austria (1)
Charité - Universitätsmedizin Berlin (1)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (1)
Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen (1)

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Identification of P-body components by proximity labeling and IP-MSMS

Identification of interactors of Arabidopsis P-body components DCP1 and DCP5 in Col-0 and atg5-1 Arabidopsis thaliana plants by IP-MSMS, and in transiently transformed Nicotiana benthamiana by proximity labeling.

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Nicotiana benthamiana Pseudomonas syringae pv. tomato

2026-03-17 | PXD074949 | Pride

Histone modification profile of Pristionchus pacificus

Pristionchus pacificus has emerged as a valuable model system for comparative and evolutionary-developmental biology (evo-devo) studies alongside the classic model nematode C. elegans. Previous studies have identified a lack of conservation of genetic networks underlying conserved traits, referred t...

ORGANISM(S): Pristionchus pacificus Nematoda

2024-03-14 | PXD046748 | Pride

Gradual Coordination and Reversible P-P Bond Activation of a P₃ -Unit with Transition Metal Carbonyls.

Not available

S-EPMC10953586 | biostudies-literature

Effect of HDAC inhibitors on acetylated histones in P. pacificus

Western Blot showed that epigenetic control of the mouth dimorphism in P. pacificus correlates with histone 4 acetylation. This result was validated by mass spectrometry. This experiment profiled histone acetylation in the presence and absence of the histone deacetylase (HDAC) inhibitor Trichostatin...

ORGANISM(S): Pristionchus pacificus

2023-02-24 | PXD018940 | Pride

Phenotypic plasticity Epigenetics Histones Pristionchus pacificus

Parabens Permeation through Biological Membranes: A Comparative Study Using Franz Cell Diffusion System and Biomimetic Liquid Chromatography.

Not available

S-EPMC9268571 | biostudies-literature

Application of a Customised Franz-Type Cell Coupled with HPTLC to Monitor the Timed Release of Bioactive Components in Complex Honey Matrices.

Not available

S-EPMC10459218 | biostudies-literature

Chalcogen-Transfer Rearrangement: Exploring Inter- versus Intramolecular P-P Bond Activation.

Not available

S-EPMC7839705 | biostudies-literature