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ProteomicsA COFRADIC protocol to study protein ubiquitination
We here apply the COmbined FRActional DIagonal Chromatography (COFRADIC) technology to enrich for ubiquitinated peptides and identify sites of ubiquitination by mass spectrometry. Our technology bypasses the need to ectopically overexpress tagged variants of ubiquitin and the use of sequence-biased ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-29 | MSV000080780 | MassIVE
TranscriptomicsTranscriptome study of Caulobacter RHG1 and Bacillus sp. treated Arabidopsis thaliana roots at 12 and 48 hours after treatment
Arabidopsis thaliana 4-day-old seedlings were treated with the plant growth promoting rhizobacteria Caulobacter RHG1 or the neutral bacteria Bacillus sp. At 12 and 48 hours after treatment, roots were harvested, RNA was extracted and RNA-Seq data were generated. The goal of this experiment was to de...
ORGANISM(S): Arabidopsis thaliana 
2023-03-11 | E-MTAB-12690 | biostudies-arrayexpress
ProteomicsSystemic Proteome Remodeling in Soybean During Nodulation (responses in roots)
The aim of this project was to study rhizobia-induced proteome changes in soybean roots during early nodulation, with potential links with the autoregulation of nodulation pathway. Gene expression analysis of marker genes of the pathway, namely RIC1, RIC2, miR2111 and TML1a/1b, allowed to select thr...
ORGANISM(S): Glycine max 
2026-10-19 | PXD079829 | Pride
Proteomics Nodulation Isoflavonoids Jasmonic acid Metabolomics Immunity Nark Autoregulation of nodulation Early nodulation Soybean 
ProteomicsSystemic Proteome Remodeling in Soybean During Nodulation (responses in leaves)
The aim of this project was to study rhizobia-induced proteome changes in soybean leaves, that might be linked with the autoregulation of nodulation, mediated by the Nodulation Autoregulation Receptor Kinase (NARK). Gene expression analysis of marker genes of the pathway, namely RIC1, RIC2, miR2111 ...
ORGANISM(S): Glycine max 
2026-10-05 | PXD078508 | Pride
Proteomics Nodulation Isoflavonoids Jasmonic acid Metabolomics Immunity Nark Autoregulation of nodulation Early nodulation Soybean 
ProteomicsQuantitative tandem affinity purification, an effective tool to investigate protein complex composition in plant hormone signaling: strigolactones in the spotlight
Phytohormones tightly regulate plant growth by integrating changing environmental and developmental cues. Although the key players have been identified in many plant hormonal pathways, the molecular mechanisms and mode of action of perception and signaling remain incompletely resolved. Characterizat...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-04-26 | PXD009083 | Pride
Qtap Plant hormone signaling Strigolactones Smxl7 
ProteomicsUnraveling the MAX2 Protein Network in Arabidopsis thaliana: Identification of the Protein Phosphatase PAPP5 as a Novel MAX2 Interactor
The F-box protein MORE AXILLARY GROWTH 2 (MAX2) is a central component in the signaling cascade of strigolactones (SLs) as well as of the smoke derived karrikins (KARs) and the so far unknown endogenous KAI2 ligand (KL). The two groups of molecules are involved in overlapping and unique developmenta...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-01-06 | PXD015657 | Pride
Ap-ms Papp5 Proteomics Max2 Phosphorylation Arabisopsis thaliana 
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