Gordon M M MM - OmicsDI

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Unknown (485)
Transcriptomics (57)
Proteomics (48)
Genomics (40)
Metabolomics (13)

Organisms

Homo sapiens (65)
Mus musculus (31)
Schizosaccharomyces pombe (5)
Bos taurus (5)
Saccharomyces cerevisiae (4)
Salmonella enterica (2)
Solanum tuberosum (2)
Rattus norvegicus (2)
Talaromyces marneffei (1)
Bacteroides ovatus (1)
Bacteroides thetaiotaomicron (1)
Zea mays (1)
Mycobacterium tuberculosis (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Bacteria (1)
Chlorocebus aethiops (1)
Leishmania donovani (1)
Macaca mulatta (1)

Organisms

Homo sapiens (3)
Bacteroides thetaiotaomicron (1)

Repository

biostudies-arrayexpress (76)
pride (43)
EGA (17)
MetaboLights (13)
MassIVE (5)
ENA (4)

Tissue

Cell culture (9)
Macrophage (3)
T cell (3)
Blood (2)
Blood plasma (2)
Brain (2)
Colon epithelial cell (2)
Epithelial cell (2)
Liver (2)
Lung (2)
Permanent cell line cell (2)
Spleen (2)
Cell line cell (1)
Cerebrospinal fluid (1)
Early embryonic cell (1)
Ewing's sarcoma cell (1)
Extracellular matrix constituent secretion (1)
Eye (1)
Hepatocyte (1)
Ileum (1)
Kidney (1)
Pancreatic cancer cell (1)
Peritoneal fluid (1)
Podocyte (sensu Diptera) (1)
Saliva (1)
Sciatic nerve (1)

Disease

Colon cancer (3)
Normal (2)
Disease free (2)
Liver cancer (2)
Ovarian cancer (1)
Brain cancer (1)
Glaucoma (1)
Leishmaniasis (1)
Lung carcinoma (1)
Tauopathy (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (43)
Shotgun proteomics (24)
Mass spectrometry (12)
Illumina 15K (8)
Data-independent acquisition (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
SWATH MS (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)

Instrument Platform

TSQ Quantiva (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina Genome Analyzer IIx (3)
Liquid Chromatography MS - negative - reverse phase (3)
Vortex (2)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Illumina Genome Analyzer II (1)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 2000 (1)
Orbitrap Fusion Lumos (1)
5975C Series GC/MSD (Agilent) (1)
Agilent 5973 GC-MS (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
ITQ 900 (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
MS Imaging - (1)
QExactive GC (Thermo Scientific) (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2014 (12)
2013 (11)
2011 (10)
2010 (10)
2020 (10)
2024 (9)
2021 (8)
2023 (8)
2018 (7)
2016 (6)
2008 (6)
2025 (6)
2022 (6)
2012 (5)
2015 (4)
2019 (4)
2026 (4)
2007 (3)
2017 (2)
2009 (2)
2006 (2)
2005 (1)
2004 (1)

CHEBI ID

CHEBI:15756 (5)
CHEBI:78320 (5)
CHEBI:15428 (4)
CHEBI:15741 (4)
CHEBI:16335 (3)
CHEBI:17234 (3)
CHEBI:17822 (3)
CHEBI:18186 (3)
CHEBI:18237 (3)
CHEBI:26271 (3)
CHEBI:28044 (3)
CHEBI:28842 (3)
CHEBI:10642 (2)
CHEBI:142688 (2)
CHEBI:15354 (2)
CHEBI:15891 (2)
CHEBI:16024 (2)
CHEBI:16113 (2)
CHEBI:16411 (2)
CHEBI:16449 (2)
CHEBI:16765 (2)
CHEBI:16811 (2)
CHEBI:16899 (2)
CHEBI:16958 (2)
CHEBI:17126 (2)
CHEBI:17148 (2)
CHEBI:17268 (2)
CHEBI:17306 (2)
CHEBI:17368 (2)
CHEBI:17561 (2)

Metabolite Name

Adenosine (2)
Glucose (2)
Hexadecanoic acid (2)
Lactate (2)
P-Hydroxyphenylacetic acid (2)
Palmitic acid (2)
Phenylalanine (2)
Proline (2)
Serine (2)
Tyrosine (2)
Xanthine (2)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparagine (1)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparaginyl-D-asparagine (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5,7-dihydroxyoctadeca-8,10,12-trienoic acid (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienoic acid (1)
1,3-Diaminopropane (1)
1-Methylnicotinamide (1)
10-hydroxystearic acid (1)
13C6-Glucose, 6TMS + oxime (1)
2,2',2''-((2R,5R,8S,11R)-11-((2R,4S,5E,7E,9E)-2,4-dihydroxypentadeca-5,7,9-trien-1-yl)-3,6,9,13,17-pentaoxo-1,4,7,10,14-pentaazacycloheptadecane-2,5,8-triyl)triacetamide (1)
2,3,4,5-Tetrahydroxypentanal (1)
2,5-Furandicarboxylic acid (1)
2-Deoxy-D-glucose + 4TMS + Oxime (1)
2-Hydroxy-2-methylbutyric acid (1)
2-Hydroxy-3-methylvaleric acid (1)
2-Hydroxybutyric acid (1)
2-Hydroxyisobutyric acid (1)
2-Hydroxyisovaleric acid (1)
2-Hydroxyphenylacetic acid (1)
2-Methylhippuric acid (1)

First Public Date

2014 (2)
2023 (1)
2013 (1)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (24)
ChIP-seq (19)
RNA-seq of coding RNA (12)
ChIP-chip by tiling array (8)
ChIP-chip by array (5)
Methylation profiling by array (3)
Comparative genomic hybridization by array (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Other (1)

Release Date

2023 (55)
2024 (54)
2021 (53)
2025 (48)
2022 (46)
2013 (30)
2015 (29)
2020 (29)
2014 (28)
2018 (25)
2016 (23)
2011 (22)
2017 (21)
2009 (21)
2010 (16)
2012 (14)
2008 (13)
2019 (13)
2026 (7)
2007 (6)
2006 (3)
2000 (3)
2005 (1)
2004 (1)

Lab affiliation

Senior Director, Dynamic Omics, CGR, One Medimmune Way Gaithersburg, MD 20878 (2)
The University of Melbourne (2)
Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
Cancer Proteomics Lab Department of Molecular Cell Biology Weizmann Institute of Science, Rehovot (1)
Cancer proteomics lab Department of Molecular Cell Biology Weizmann Institute of Science (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Center for Metabolic Disease Research (CMDR) Lewis Katz School of Medicine at Temple University Medical Education and Research Building, Room 1060 3500 N. Broad Street Philadelphia, PA 19140, USA (1)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118, USA National Emerging Infectious Diseases Laboratories (NEIDL), Boston University, Boston, MA 02118, USA (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biomedical Engineering, Georgia Institute of Technology and Emory University Department of Chemistry, Emory University (1)
Department of Biomolecular Sciences. Weizmann Institute of Science. Rehovot, Israel (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (1)
Department of Cellular and Molecular Pharmacology, University of California San Francisco, USA (1)
Department of Geoscience, University of Calgary, Calgary Ab, Canada (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA (1)
Department of Medicine, Nephrology and Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (1)
Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA (1)
Department of Pediatrics, Section of Hematology-Oncology Baylor College of Medicine Texas Children's Hospital Houston, Texas (1)
Department of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, GA 30322, USA (1)
Discovery Proteomics Facility (1)
Discovery Proteomics Facility, Oxford (1)
Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University; Atlanta, Georgia, USA (1)
Emory University School of Medicine, Department of Pathology and Laboratory Medicine, Pathology Advanced Translational Research Unit (1)
Faculty of Dentistry, Oral & Craniofacial Sciences, King’s College London (London, UK) (1)
Institute for Clinical Chemistry and Laboratory Medicine, Vascular Biology Laboratory, University Medical Center Hamburg, Hamburg, Germany (1)
Institute for Clinical Chemistry and Laboratory Medicine, Vascular Biology Laboratory, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Institute of Immunology and Infection Research, School of Biological Sciences, University of Edinburgh, UK (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Mass Spectrometry Research and Support Group National Institute of Environmental Health Sciences 111 TW Alexander Drive MD F0-04 Research Triangle Park, North Carolina 27709 (1)

Tags

xref:PubMed:19525931 (2)
xref:PubMed:15790854 (1)
xref:PubMed:37018654 (1)
xref:PubMed:16735464 (1)
pathogen:bacterium (1)
pathogen (1)

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M-Chem: a Modular Software Package for Molecular Simulation that Spans Scientific Domains.

Not available

S-EPMC10353727 | biostudies-literature

PNPLA6 mutations cause Boucher-Neuhauser and Gordon Holmes syndromes as part of a broad neurodegenerative spectrum.

Not available

S-EPMC3891450 | biostudies-literature

Differential expression of genes in the WT and hupB KO strain of Mycobacterium tuberculosis H37Rv upon iron limitation

HupB is a 28 kDa in Mycobacterium tuberculosis that is co-expressed with the siderophores mycobactin and carboxymycobactin upon iron limitation. High levels of all the three components are seen in low iron (LI; 0.02 M-BM-5g Fe / mL) organisms, with negligible expression in high iron organisms (HI; 8...

ORGANISM(S): Mycobacterium tuberculosis

2014-03-18 | E-GEOD-53254 | biostudies-arrayexpress

Comparative, multidimensional imaging of patent ductus arteriosus and a proposed update to the morphology classification system for dogs.

Not available

S-EPMC5866990 | biostudies-literature

Penicillium marneffei: Gene expression profiling of hyphal and yeast cells and during conidiation

Penicillium marneffei (Talaromyces marneffei) is an opportunistic human pathogen that can grow in a multicellular hyphal form at 25M-BM-0C or a unicellular fission yeast form at 37M-BM-0C, and can switch between these two forms in response to temperature. The yeast form is found in infected individu...

ORGANISM(S): Talaromyces marneffei

2013-11-21 | E-GEOD-51109 | biostudies-arrayexpress

Distinctive Chromatin in Human Sperm Packages Genes that Guide Embryo Development: ChIP-seq

As nucleosomes are widely replaced by protamine in mature human sperm, epigenetic contributions to embryo development appear limited. However, our genome-wide approaches find nucleosomes at low levels genome-wide, but also significantly enriched at imprinted gene clusters, miRNA clusters, HOX gene...

ORGANISM(S): Homo sapiens

2009-06-15 | E-GEOD-15690 | biostudies-arrayexpress

Proteomic dynamic changes in HDL subfractions from mouse plasma

HDL proteome dynamics may determine HDL cardioprotective functions. We aimed to characterize proteome and lipid profiles in small, medium and large (S/M/L) HDL fractions and analyze their functions. We characterized mouse HDL fractions by their high phospholipid (PL) content and collected S/M/L-HDL...

ORGANISM(S): Mus musculus (Mouse)

2019-11-12 | PXD011185 | Pride

Genome-wide mapping of Runx2 occupancy during the proliferation, matrix deposition, and mineralization stages of preosteoblast

Osteogenesis is a highly regulated developmental process and continues during the turnover and repair of mature bone. Runx2, the master regulator of osteoblastogenesis, directs a transcription program essential for bone formation through both genetic and epigenetic mechanisms. While individual Runx2...

ORGANISM(S): Mus musculus

2014-02-13 | E-GEOD-54013 | biostudies-arrayexpress

A defect in ATP-citrate lyase links acetyl-CoA production, virulence factor elaboration and virulence in Cryptococcus neoformans

The interaction of Cryptococcus neoformans with phagocytic cells of the innate immune system is a key step in disseminated disease leading to meningoencephalitis in immunocompromised individuals. Transcriptional profiling of cryptococcal cells harvested from cell culture medium or from macrophages ...

ORGANISM(S): Cryptococcus neoformans var. grubii H99

2013-08-15 | E-GEOD-41066 | biostudies-arrayexpress

The influence of external electric fields on proton transfer tautomerism in the guanine-cytosine base pair.

Not available

S-EPMC8330266 | biostudies-literature

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643 Results

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