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TranscriptomicsRL-SAGE analysis of Zea mays leaf transcriptome
Using the RL-SAGE method (Gowda et al. 2004), a maize leaf longSAGE library (cv. inbred line B73) was constructed. Leaf tissues were harvested from 4-week old B73 plants for RNA isolation. The conditions in the growth chamber were 12 h light (500 µmol photons m-2 sec-1), 20oC at night, 26oC in the d...
ORGANISM(S): Zea mays 
2010-12-10 | E-GEOD-25994 | biostudies-arrayexpress
TranscriptomicsOryza sativa, Nipponbare RNA-Seq - Conserved Poaceae Specific Genes Project
Illumina RNA Sequencing (RNA-Seq) of Oryza sativa, Nipponbare for the Conserved Poaceae Specific Genes project. Authors: Robin Buell, Ning Jiang, Haining Lin, Rebecca Davidson, Malali Gowda, John Hamilton, Brieanne Vaillancourt
ORGANISM(S): Oryza sativa Japonica Group 
2012-04-04 | E-MTAB-2039 | biostudies-arrayexpress
TranscriptomicsRL-SAGE analysis of Zea mays leaf transcriptome
Using the RL-SAGE method (Gowda et al. 2004), a maize leaf longSAGE library (cv. inbred line B73) was constructed. Leaf tissues were harvested from 4-week old B73 plants for RNA isolation. The conditions in the growth chamber were 12 h light (500 µmol photons m-2 sec-1), 20oC at night, 26oC in the d...
ORGANISM(S): Zea mays 
2010-12-10 | GSE25994 | GEO
UnknownNMDAR mediated dynamic changes in m6A inversely correlates with neuronal translation.
Not available
S-EPMC9256623 | biostudies-literature
ProteomicsSecretome analysis of oral keratinocytes chronically exposed to shisha
Shisha smoking has been associated with multiple diseases including oral cancer. However, a mechanistic study to investigate alteration of secreted proteins in oral cells due to shisha smoking is lacking. Elucidation of differentially secreted proteins by immortalized human normal oral keratinocyte...
ORGANISM(S): Homo sapiens (Human) 
2026-04-27 | PXD011130 | Pride
Tmt Okf6/tert1 Oral cancer Secretome Waterpipe Proteomics 
ProteomicsA multi-omic analysis to characterize cigarette smoke induced molecular alterations in esophageal cells
Esophageal squamous cell carcinoma (ESCC) is one of the most common cancers with high mortality rate. Smoking is one of the established risk factors of ESCC. However, there is limited data on molecular alterations associated with cigarette smoke exposure in esophageal cells. Understanding the effect...
ORGANISM(S): Homo sapiens (Human) 
2021-09-07 | PXD007799 | Pride
Esophageal cancer Cigarette smoke Dna damage response 
ProteomicsSILAC-based proteomic approach to delineate molecular alterations associated with erlotinib resistance in head and neck squamous cell carcinoma
Although Epidermal growth factor receptor (EGFR) is overexpressed in 90% of Head and neck squamous cell carcinoma (HNSCC) patients. Clinical trials with EGFR-targeted small molecule inhibitors such as erlotinib have shown a modest activity in recurrent or advanced HNSCC. To investigate the acquired ...
ORGANISM(S): Homo sapiens (Human) 
2019-12-18 | PXD007768 | Pride
Head and neck cancer Mass spectrometry Signaling pathways Quantitative proteomics Egfr-tyrosine kinase inhibitor resistance 
TranscriptomicsOryza Sativa and Magnaporthe Grisea LongSAGE
LongSAGE library in this series are from 'Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Patho-System' project. This work is supported by NSF-PGRP #0115642. Keywords: other
ORGANISM(S): Oryza sativa Japonica Group 
2004-11-07 | E-GEOD-1924 | biostudies-arrayexpress
ProteomicsA multi-omic analysis to characterize cigarette smoke induced molecular alterations in esophageal cells: phosphoproteomics
Esophageal squamous cell carcinoma (ESCC) is one of the most common cancers with high mortality rate. Smoking is one of the established risk factors of ESCC. However, there is limited data on molecular alterations associated with cigarette smoke exposure in esophageal cells. Understanding the effect...
ORGANISM(S): Homo sapiens (Human) 
2021-09-07 | PXD007814 | Pride
Esophageal cancer Cigarette smoke Dna damage response 
ProteomicsGenetic aberrations in MAP kinase pathway play an important role in erlotinib resistance in head and neck cancer
Epidermal growth factor receptor (EGFR), a receptor tyrosine kinase is overexpressed in 90% of Head and neck squamous cell carcinoma (HNSCC) patients. Clinical trials with EGFR-targeted tyrosine kinase inhibitors such as erlotinib have shown a modest activity in HNSCC alternate mechanisms of resist...
ORGANISM(S): Homo sapiens (Human) 
2019-12-18 | PXD007785 | Pride
Head and neck cancer Mass spectrometry Signaling pathways Quantitative phosphoproteomics Egfr-tyrosine kinase inhibitor resistance 
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