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ProteomicsGlobal discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
RNA-binding proteins (RBPs) play important roles in bacterial gene expression and physiology but their true number and functional scope remain little understood even in model microbes. To advance global RBP discovery in bacteria, we here establish glycerol gradient sedimentation with RNase treatment...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Bacteria 
2020-07-16 | PXD018422 | Pride
Salmonella Yafb Gradr Hfq Csra Proq Faba Rbp 
ProteomicsA multiomics framework for high-throughput lncRNA characterization uncovers major immune regulators
Long noncoding RNAs (lncRNAs) play crucial roles in eukaryotic biology, yet their functions in the immune system are not fully understood. This study presents a comprehensive resource on the regulation, pathway dependencies, subcellular localizations, and protein interactomes of lncRNAs in immune ce...
ORGANISM(S): Homo sapiens (Human) 
2025-10-01 | PXD053952 | Pride
Macrophage Lncrna Ac022816 Inflammation Smylr Lung Rocki Linc01215 Immunity Gradr 
ProteomicsA multiomics framework for high-throughput lncRNA characterization uncovers major immune regulators
Long noncoding RNAs (lncRNAs) play crucial roles in eukaryotic biology, yet their functions in the immune system are not fully understood. This study presents a comprehensive resource on the regulation, pathway dependencies, subcellular localizations, and protein interactomes of lncRNAs in immune ce...
ORGANISM(S): Homo sapiens (Human) 
2025-05-01 | PXD061457 | Pride
Macrophage Lncrna Ac022816 Inflammation Smylr Lung Rocki Linc01215 Immunity Gradr 
TranscriptomicsAtlas of pathogen-sensitive myeloid lncRNA networks in humans (SMyLR catalog) [RNA-seq]
Long noncoding RNAs (lncRNAs) play crucial roles in eukaryotic biology, yet their functions in the immune system are not fully understood. This study presents a comprehensive resource on the regulation, pathway dependencies, subcellular localizations, and protein interactomes of lncRNAs in immune ce...
ORGANISM(S): Homo sapiens 
2025-04-11 | GSE268547 | GEO
GenomicsAtlas of pathogen-sensitive myeloid lncRNA networks in humans (SMyLR catalog) [ChIRP-seq]
Long noncoding RNAs (lncRNAs) play crucial roles in eukaryotic biology, yet their functions in the immune system are not fully understood. This study presents a comprehensive resource on the regulation, pathway dependencies, subcellular localizations, and protein interactomes of lncRNAs in immune ce...
ORGANISM(S): Homo sapiens 
2025-04-11 | GSE268546 | GEO
UnknownGlobal discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein.
Not available
S-EPMC7491321 | biostudies-literature
UnknownA searchable atlas of pathogen-sensitive lncRNA networks in human macrophages.
Not available
S-EPMC12095776 | biostudies-literature
UnknownRAPDOR: Using Jensen-Shannon Distance for the computational analysis of complex proteomics datasets.
Not available
S-EPMC12475003 | biostudies-literature
GenomicsAtlas of pathogen-sensitive myeloid lncRNA networks in humans (SMyLR catalog) [ChIRP-seq]
Atlas of pathogen-sensitive myeloid lncRNA networks in humans (SMyLR catalog) [ChIRP-seq]
PRJNA1117776 | ENA
GenomicsAtlas of pathogen-sensitive myeloid lncRNA networks in humans (SMyLR catalog) [RNA-seq]
Atlas of pathogen-sensitive myeloid lncRNA networks in humans (SMyLR catalog) [RNA-seq]
PRJNA1117778 | ENA
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