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ProteomicsPhotoperiodic control of the Arabidopsis proteome
Plants respond to seasonal cues such as the photoperiod, to adapt to current conditions and to prepare for environmental changes in the season to come. To assess photoperiodic responses at the protein level, we quantified the proteome of the model plant Arabidopsis thaliana by mass spectrometry acro...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-02-27 | PXD006848 | Pride
Arabidopsis thaliana Shotgun proteomics End of day Size fractionation Photoperiod Sds page 
ProteomicsProteome analysis of Arabidopsis thaliana circadian clock mutants
The circadian clock is comprised of proteins that form negative feedback loops, which regulate the timing of global gene expression in a coordinated 24 hour cycle. As a result, the plant circadian clock is responsible for regulating numerous physiological processes central to growth and survival. To...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-01-02 | PXD004763 | Pride
Arabidopsis thaliana End of day End of night Circadian clock Shotgun Proteome 
ProteomicsHit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments.
Traditional in gel-digestion procedures require extensive sample handling, are prone to contamination and not compatible with high-throughput sample preparation. To address these shortcomings, we have modified the conventional in-gel digestion procedure for high-throughput proteomics studies. The mo...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-10-16 | PXD009485 | Pride
Large-scale In-gel digestion Proteomics Tryptic digest Fractionation Native protein complex Sample preparation High-throughput Lc-ms/ms 
ProteomicsHit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments.
Traditional in gel-digestion procedures require extensive sample handling, are prone to contamination and not compatible with high-throughput sample preparation. To address these shortcomings, we have modified the conventional in-gel digestion procedure for high-throughput proteomics studies. The mo...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-10-16 | PXD009510 | Pride
Large-scale In-gel digestion Proteomics Tryptic digest Fractionation Native protein complex Sample preparation High-throughput Lc-ms/ms 
ProteomicsProtein Complex identification and quantitative complexome by CN-PAGE
The majority of cellular processes are carried out by protein complexes. Various size fractionation methods have previously been combined with mass spectrometry to identify protein complexes. However, most of these approaches lack the quantitative information which is required to understand how chan...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-11-12 | PXD010919 | Pride
Cn-page Mass spectrometry Proteomics Protein complexes Protein-protein interactions 
TranscriptomicsDeep Sequencing of the Porcine Endometrial Transcriptome on Day 14 of Pregnancy
In pigs, conceptus attachment to the uterine surface epithelium starts around day 14 of pregnancy preceded by a pronounced vascularization at the implantation zones, initiating the epitheliochorial placentation. To characterize the complex transcriptome changes in the endometrium in the course of in...
ORGANISM(S): Sus scrofa 
2013-03-07 | E-GEOD-43667 | biostudies-arrayexpress
TranscriptomicsDeep sequencing of the porcine endometrial transcriptome on day 12 of pregnancy
The porcine conceptus undergoes rapid differentiation and expansion of its trophoblastic membranes between Days 11 and 12 of gestation. Concomitant with trophoblast elongation, production of conceptus estrogen, the porcine embryonic pregnancy recognition signal increases. Conceptus attachment to the...
ORGANISM(S): Sus scrofa 
2013-10-31 | E-GEOD-48862 | biostudies-arrayexpress
ProteomicsSo ce56 secretome LC-MS/MS
In this work, the secretome of the aerobic soil bacterium Sorangium cellulosum So ce56 was studied and the main hemicellulases for the degradation of arabinoxylan, avicel, wheat straw and oat spelts xylan were determined. For this purpose, bacterial cultures were set in triplicate for each substrate...
ORGANISM(S): Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)) 
2022-03-02 | PXD003639 | Pride
Biomass degradation Secretion Hemicellulases Sorangium cellulosum 
UnknownNew records for the Western Balkans cranefly fauna (Diptera, Tipuloidea) with the description of a new Baeoura Alexander (Diptera, Limoniidae).
Not available
S-EPMC10193851 | biostudies-literature
TranscriptomicsFine mapping of genome activation in bovine embryos by RNA sequencing
During maternal-to-embryonic transition control of embryonic development gradually switches from maternal RNAs and proteins stored in the oocyte to gene products generated after embryonic genome activation (EGA). Detailed insight into the onset of embryonic transcription is obscured by the presence ...
ORGANISM(S): Bos taurus 
2014-02-09 | E-GEOD-52415 | biostudies-arrayexpress
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