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Unknown (585)
Transcriptomics (457)
Metabolomics (161)
Proteomics (61)
Genomics (30)
Other (4)

Organisms

Mus musculus (132)
Homo sapiens (115)
Rattus norvegicus (45)
Arabidopsis thaliana (30)
Bos taurus (19)
Saccharomyces cerevisiae (14)
Sus scrofa (12)
Salmo salar (10)
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Chlamydomonas reinhardtii (5)
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Staphylococcus aureus (4)
Solanum lycopersicum (4)
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Gallus gallus (4)
Drosophila melanogaster (4)
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Lactococcus lactis (2)
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Glycine max (2)
Ovis aries (2)
Pseudomonas aeruginosa (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Danio rerio (2)
mixed culture KAZ_0815 (1)
Bacillus subtilis subsp. natto (1)
Coccomyxa subellipsoidea C-169 (1)
Methanobrevibacter ruminantium (1)
Vibrio parahaemolyticus RIMD 2210633 (1)

Organisms

Toxoplasma gondii RH (1)
Lactiplantibacillus plantarum (1)
Staphylococcus aureus (1)
Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (477)
MetaboLights (161)
MassIVE (45)
pride (15)
ENA (8)
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geo (3)
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iProX (1)

Tissue

Cell culture (5)
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Adipose tissue (1)
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Blood (1)
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Endothelial cell of umbilical vein (1)
Foreskin fibroblast cell line (1)
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Tachyzoite (1)

Disease

Normal (3)
Apparently healthy (2)
Burn injury (1)
CAMN (1)
Colonic adenocarcinoma (1)
Hypopituitary (1)
Glioblastoma (1)
Huntington Disease (1)

Technology Type

Mass spectrometry (142)
Mass Spectrometry (15)
Mass spectrometry assay (11)
NMR spectroscopy (8)
Affinity purification coupled with mass spectrometry proteomics (8)
Shotgun proteomics (6)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Q Exactive (20)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 2500 (6)
Orbitrap Fusion (5)
Illumina HiSeq 1500 (4)
Orbitrap Fusion Lumos (4)
Q Exactive HF (4)
NextSeq 500 (3)
LTQ Orbitrap Velos (3)
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Agilent G2505B scanner (2)
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Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 (1)
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Affymetrix GeneChip(R) HT Scanner (1)
ScanArray scanning hardware (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
G2505A DNA microarray scanner [Agilent] (1)
Bioanalyser (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Affymetrix Fluidics Station 400 (1)
NextSeq 2000 (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
Illumina HiSeq 3000 (1)

Publication Date

2015 (65)
2010 (60)
2013 (59)
2016 (51)
2014 (44)
2025 (41)
2012 (41)
2009 (40)
2022 (38)
2008 (38)
2011 (33)
2024 (27)
2023 (24)
2019 (22)
2021 (21)
2017 (21)
2018 (20)
2007 (16)
2020 (15)
2026 (15)
2004 (4)
2006 (3)
2005 (2)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)
3847.GLYMA01G23427.1 (2)
3847.GLYMA01G25116.1 (2)
3847.GLYMA01G27160.1 (2)
3847.GLYMA01G29440.1 (2)
3847.GLYMA01G33803.1 (2)
3847.GLYMA01G35730.1 (2)
3847.GLYMA01G35820.1 (2)
3847.GLYMA01G42950.2 (2)
3847.GLYMA02G01060.2 (2)
3847.GLYMA02G01170.1 (2)
3847.GLYMA02G04090.1 (2)
3847.GLYMA02G06710.1 (2)
3847.GLYMA02G07430.1 (2)
3847.GLYMA02G07740.1 (2)
3847.GLYMA02G11920.1 (2)
3847.GLYMA02G14495.1 (2)
3847.GLYMA02G14521.1 (2)

CHEBI ID

CHEBI:15756 (32)
CHEBI:30769 (29)
CHEBI:15891 (28)
CHEBI:15428 (27)
CHEBI:16196 (27)
CHEBI:27897 (27)
CHEBI:28044 (26)
CHEBI:17351 (25)
CHEBI:17368 (25)
CHEBI:30805 (25)
CHEBI:17596 (24)
CHEBI:28842 (24)
CHEBI:28875 (24)
CHEBI:15741 (23)
CHEBI:16919 (23)
CHEBI:16335 (22)
CHEBI:16704 (22)
CHEBI:17568 (22)
CHEBI:17992 (22)
CHEBI:28716 (22)
CHEBI:16411 (21)
CHEBI:16737 (21)
CHEBI:7916 (21)
CHEBI:15354 (20)
CHEBI:16977 (20)
CHEBI:17154 (20)
CHEBI:17822 (20)
CHEBI:17895 (20)
CHEBI:18186 (20)
CHEBI:25017 (20)

Metabolite Name

Creatine (24)
Taurine (23)
Uridine (22)
Creatinine (21)
Hypoxanthine (21)
Adenosine (20)
Inosine (20)
L-Phenylalanine (20)
L-Tyrosine (20)
Uracil (20)
L-Valine (19)
Xanthine (19)
Adenine (18)
Cytidine (17)
L-Histidine (17)
Oleic acid (17)
Betaine (16)
L-Arginine (16)
L-Leucine (16)
L-Proline (16)
Azelaic acid (15)
Choline (15)
Cytosine (15)
Dodecanoic acid (15)
Glycerophosphocholine (15)
Linoleic acid (15)
Riboflavin (15)
L-Glutamine (14)
L-Tryptophan (14)
Leucine (14)

First Public Date

2024 (2)
2021 (2)
2022 (1)
2020 (1)
2018 (1)
2014 (1)

Classification

protozoa (1)
bacteria (1)

Study type

Transcription profiling by array (364)
RNA-seq of coding RNA (61)
ChIP-seq (21)
Unknown experiment type (10)
Other (6)
Transcription profiling by tiling array (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Differential (1)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2015 (86)
2022 (79)
2016 (71)
2013 (69)
2010 (66)
2023 (65)
2025 (64)
2024 (61)
2014 (61)
2020 (50)
2021 (49)
2012 (49)
2019 (44)
2017 (44)
2009 (42)
2011 (41)
2008 (40)
2018 (39)
2007 (17)
2026 (16)
2004 (4)
2006 (3)
2005 (2)

Lab affiliation

Department of Biochemistry and Chemistry, Centre for Cardiovascular Biology and Disease Research, La Trobe Institute for Molecular Science, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria 3086, Australia (1)
Department of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (1)
Department of Biochemistry and Molecular Biology; and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, VIC 3010. Australia (1)
Department of Biochemistry, University of Cambridge, UK (1)
Department of Biomedicine, University of Bergen, Norway (1)
Department of Chemistry,University of Virginia,Charlottesville, VA 22903 USA (1)
Department of Experimental Parasitology LMU München Lena-Christ-Str. 48 82152 Planegg-Martinsried Telefon: +49 (0) 89 2180 - 3622 Fax: +49 (0) 89 2180 - 3623 E-Mail: markus.meissner@lmu.de (1)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Monash University, Clayton Campus Clayton 3800 Victoria Australia (1)
Dr Stéphane VINCENT, PhD, HDR Chargé de recherche INSERM INSERM/CNRS/Université de Strasbourg IGBMC/UMR 7104/U1258 1, rue Laurent Fries BP 10142 67404 ILLKIRCH CEDEX FRANCE Tel: +33 (0)3 88 65 34 25 Fax: +33 (0)3 88 65 32 01 (1)
Infection and Immunity Program & Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
PRISM U1192 Universite de Lille FRANCE (1)
Professor Anthony W Purcell Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Monash University, Clayton Campus Clayton 3800 Victoria Australia (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
The Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
The Francis Crick Institute London, UK (1)

Tags

pathogen (2)
xref:PubMed:32518180 (1)
xref:PubMed:20829372 (1)
xref:PubMed:29615509 (1)
pathogen:protozoan (1)
pathogen:bacterium (1)

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S-GRAS score for prognostic classification of adrenocortical carcinoma: an international, multicenter ENSAT study.

Not available

S-EPMC8679848 | biostudies-literature

The Modified S-GRAS Scoring System for Prognosis in Korean with Adrenocortical Carcinoma.

Not available

S-EPMC11525693 | biostudies-literature

Next Generation Sequencing of tomato WT, M82 and pro∆GRAS mutant treated with Gibberellin

The goal of this study was to search for DELLA-independent GA-regulated genes in tomato. RNA deep sequencing (RNA-seq) was performed to GA-treated M82 and pro∆GRAS mutant. Using a two fold increased or decreased cutoff we identified 81 GA-up regulated and 15 GA-down regulated genes, from which five ...

ORGANISM(S): Solanum lycopersicum

2015-07-09 | E-GEOD-68018 | biostudies-arrayexpress

Polyunsaturated dietary fats decrease mortality and bacterial load during septic S. aureus infection, and improve neutrophil function in mice

Severe infections and sepsis is an increasing clinical problem that cause prolonged morbidity and substantial mortality. At present, antibiotics are essentially the only pharmacological treatment for sepsis. The incidence of antibiotic resistance is increasing and it is therefore critical to find ne...

ORGANISM(S): Mus musculus

2014-11-24 | E-GEOD-58358 | biostudies-arrayexpress

rogB mutant in NEM316 S. agalactiae strain

transcritpomic analysis of rogB mutant in NEM316 S. agalactiae strain

ORGANISM(S): Streptococcus agalactiae

2012-05-21 | E-MEXP-3237 | biostudies-arrayexpress

CovRS response in S. agalactiae NEM316 strain

Analysis of the CovRS response in S. agalactiae NEM316 strain with microarrays

ORGANISM(S): Streptococcus agalactiae

2012-05-21 | E-MEXP-3304 | biostudies-arrayexpress

Strigolactone biosynthesis requires the symbiotic GRAS-type transcription factors NSP1 and NSP2

Legume GRAS-type transcription factors NSP1 and NSP2 are essential for Rhizobium Nod factor-induced nodulation. Both proteins are considered to be Nod factor response factors regulating gene expression upon symbiotic signalling. However, legume NSP1 and NSP2 can be functionally replaced by non-legum...

ORGANISM(S): Medicago truncatula

2011-11-01 | E-GEOD-26548 | biostudies-arrayexpress

S. aureus gene expression following growth in media containing oleic acid

S. aureus response to exogenous fatty acid (oleic acid) Gene expression profiles were generated by microarray analysis of S. aureus cells grown in media without or with oleic aicd Comparison of expression profiles after growth of S. aureus in exogenous fatty acid S. aureus was grown in media with an...

ORGANISM(S): Staphylococcus aureus subsp. aureus RN4220

2012-12-21 | E-GEOD-36231 | biostudies-arrayexpress

Transcriptome-based characterization of the interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat co-cultures

The present study aims to explore chemostat-based transcriptome analysis of mixed cultures by investigating interactions between the yeast S. cerevisiae and the lactic acid bacterium Lb. bulgaricus . S. cerevisiae and Lb. bulgaricus are both frequently encountered in kefir, a fermented dairy product...

ORGANISM(S): Saccharomyces cerevisiae

2013-08-22 | E-GEOD-45776 | biostudies-arrayexpress

rga response

comparison of the transcriptionnal response of the rga mutant and the wild type in S. agalactiae NEM316 strain

ORGANISM(S): Streptococcus agalactiae

2012-05-21 | E-MEXP-3236 | biostudies-arrayexpress

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