Gray Li L - OmicsDI

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Unknown (830)
Transcriptomics (49)
Proteomics (28)
Metabolomics (4)
Models (2)
Genomics (2)
Multiomics (1)
Other (1)

Organisms

Schizosaccharomyces pombe (26)
Human immunodeficiency virus 1 (26)
Oryza sativa Indica Group (26)
Sinorhizobium meliloti BL225C (26)
Sus scrofa domesticus (26)
Ostreococcus tauri (26)
Saccharomyces cerevisiae (26)
Vitis vinifera (26)
Staphylococcus aureus (26)
Rattus norvegicus (26)
Escherichia coli (26)
Candida albicans (26)
Cyanophora paradoxa (26)
Homo sapiens (20)
Mus musculus (13)
Rattus norvegicus (4)
Mammalia (2)
Zea mays subsp. mays (2)
Branchiostoma belcheri (1)
Tursiops truncatus (1)
Papio anubis (1)
Bacillus anthracis str. Sterne (1)
Junco hyemalis (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Monodelphis domestica (1)
Oryza sativa Japonica Group (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Sus scrofa (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (51)
pride (26)
MetaboLights (4)
BioModels (2)
MassIVE (2)
iProX (1)

Tissue

Cell culture (21)
Brain (2)
Epithelial cell (2)
Cell suspension culture (1)
Photosynthetic cell (1)
Hepatocyte (1)

Disease

Alzheimer's disease (1)
Neurodegenerative disease (1)
Multiple sclerosis (1)
Autism spectrum disorder (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (23)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (2)
NMR spectroscopy (1)
DiaPASEF (1)
SWATH MS (1)
SRM/MRM (1)
Data-dependent acquisition (1)

Instrument Platform

NextSeq 550 (7)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
418 [Affymetrix] (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Bruker maXis ESI Quadrupole TOF (1)
Orbitrap Eclipse (1)
Nuclear Magnetic Resonance (NMR) (1)

Publication Date

2021 (16)
2015 (9)
2013 (9)
2024 (8)
2011 (7)
2014 (5)
2020 (5)
2022 (4)
2025 (3)
2023 (2)
2019 (2)
2018 (2)
2016 (2)
2009 (2)
2008 (2)
2006 (2)
2017 (2)
2012 (1)
2010 (1)
2007 (1)

UNIPROT ID/AC

P42858 (1)
P62136 (1)
P05067 (1)
P62988 (1)
P49841 (1)
Q13315 (1)
P04637 (1)
Q00987 (1)

CHEBI ID

CHEBI:16797 (2)
CHEBI:22652 (2)
CHEBI:15676 (2)
CHEBI:15741 (2)
CHEBI:27266 (2)
CHEBI:15891 (2)
CHEBI:68616 (2)
CHEBI:27480 (2)
CHEBI:43355 (2)
CHEBI:30915 (2)
CHEBI:16737 (2)
CHEBI:15354 (2)
CHEBI:18089 (2)
CHEBI:30769 (2)
CHEBI:20067 (2)
CHEBI:26523 (1)
CHEBI:16027 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)
CHEBI:16991 (1)
CHEBI:43770 (1)
CHEBI:194267 (1)
CHEBI:191093 (1)
CHEBI:211931 (1)
CHEBI:194288 (1)
CHEBI:4874 (1)
CHEBI:190593 (1)
CHEBI:194266 (1)
CHEBI:194252 (1)
CHEBI:195266 (1)

Metabolite Name

(S)-Bromoenol lactone (1)
NNH (1)
15(R)-15-Methyl prostaglandin A2 (1)
10-methoxy-4H-benzo[4,5]cyclohepta[b]thiophen-4-one (1)
Thiamine phosphate (1)
3-phenyl-5-[3-(trifluoromethyl)-1H-pyrazol-1-yl]-1,2,4-thiadiazole (1)
Dihomo-¦Ã-linolenic acid methyl ester (1)
2-({2-[(5-methylisoxazol-3-yl)amino]-2-oxoethyl}thio)acetic acid (1)
Alpha-Methylhistamine (1)
4-hydroxy-6,7-diphenyl-5,6-dihydro-2H-pyrano[3,2-c]pyridine-2,5-dione (1)
¦´-Glutamylcysteine (1)
Diethyl 2-{[2-(2-thienylcarbonyl)hydrazino]methylidene}malonate (1)
3-(allylsulfanyl)-4-[4-(benzyloxy)phenyl]-5-methyl-4H-1,2,4-triazole (1)
All trans retinal (1)
6-Ketoprostaglandin F1alpha (1)
5-ethoxy-2-[(2,3,4,5,6-pentafluorobenzyl)thio]-1H-benzo[d]imidazole (1)
3-oxoindane-1-carboxylic acid (1)
3,6-bis[(1H-indol-3-yl)methyl]piperazine-2,5-dione (1)
3-(3-pyridinyl)propanoic acid (1)
4-(4-chlorophenoxy)-3,5-dimethyl-1H-pyrazole (1)
Beta-Nicotinamide mononucleotide (1)
Methyl 2-[(2-acetyl-3-oxo-1-butenyl)amino]acetate (1)
2-phenyl-4H-furo[2,3-h]chromen-4-one (1)
WLH (1)
3-hydroxy-1,5-diphenylpentan-1-one (1)
15-epi Cloprostenol (1)
3-(2-Naphthyl)-D-Alanine (1)
Methyl 1-isopropyl-1H-1,2,3-benzotriazole-5-carboxylate (1)
6-[(4-methylphenyl)sulfonyl]-6-azabicyclo[3.2.1]octane (1)
6-methyl-4-(morpholinomethyl)-2H-chromen-2-one (1)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (13)
CUT&RUN (7)
Comparative genomic hybridization by array (2)
Methylation profiling by high throughput sequencing (2)
Human - Single-cell sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (121)
2024 (112)
2022 (110)
2023 (97)
2021 (96)
2020 (68)
2019 (51)
2015 (39)
2018 (33)
2016 (28)
2013 (25)
2014 (21)
2011 (21)
2017 (18)
2026 (11)
2012 (8)
2009 (7)
2008 (7)
2010 (3)
2007 (3)
2006 (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (17)
BCMP, Harvard Medical School, Boston, USA Cancer Biology, Dana-Farber Cancer Institute, Boston, USA (2)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
School of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, USA (1)
Department of Neurosciences, Lerner Research Institute, Cleveland Clinic (1)
Department of Chemistry, Imperial College London, UK Chemical Glycobiology Laboratory, The Francis Crick Institute, London, UK (1)
Oceanography, University of Washington, USA (1)
Department of Chemistry, Imperial College London, UK; Chemical Glycobiology Laboratory, The Francis Crick Institute, London (1)
Yale Cancer Biology Institute (1)

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Discovery of a "White-Gray-Opaque" Tristable Phenotypic Switching System in Candida Albicans: Roles of Non-Genetic Diversity in Host Adaption

The capacity of the commensal yeast Candida albicans to grow in several forms, referred to as phenotypic plasticity, is critical for its survival, and abilities to thrive and cause infection in the human host. In this study, we report a novel phenotype of C. albicans, referred as the “gray” phenotyp...

ORGANISM(S): Candida albicans

2014-06-30 | E-GEOD-53671 | biostudies-arrayexpress

Cross-Beta Helical Fibrils of Tau and TMEM106B in Gray and White Matter of Multiple System Tauopathy with Presenile Dementia

Neurodegenerative diseases characterized by tau aggregates have distinct tau pathological profiles that may differ in relation to the morphology and structure of the filaments, the tau-isoform composition and the cell types and brain areas that are affected. Neurons, dendrites and axonal terminals a...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-12-06 | MSV000090845 | MassIVE

Alpha-L-Fucosidase Has Diagnostic Value in Prostate Cancer With "Gray-Zone PSA" and Inhibits Cancer Progression via Regulating Glycosylation.

Not available

S-EPMC8645591 | biostudies-literature

Discovery of the gray phenotype and white-gray-opaque tristable phenotypic transitions in Candida dubliniensis.

Not available

S-EPMC4871672 | biostudies-literature

Novel amdovirus in gray foxes.

Not available

S-EPMC3310670 | biostudies-literature

SST neurons in the periaqueductal gray regulate urination and bladder function.