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TranscriptomicsSystems Toxicology Identifies Mechanistic Impacts of 2-amino-4,6-dinitrotoluene (2-ADNT) Exposure in Northern Bobwhite
A systems toxicology investigation comparing and integrating transcriptomic and proteomic results was conducted to pursue a holistic understanding of the effects of the explosives degradation product 2-amino-4,6-dinitrotoluene (2A-DNT) dosing on the health of the wildlife bird model, Northern bobwhi...
ORGANISM(S): Colinus virginianus 
2015-07-01 | E-GEOD-59910 | biostudies-arrayexpress
MetabolomicsFecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial

Fecal microbiota transplantation (FMT) represents a potential strategy to overcome resistance to immune checkpoint inhibitors in patients with refractory melanoma; however, the role of FMT in first-line treatment settings has not been evaluated. We conducted a multicenter phase I trial combining ...

2025-02-27 | MTBLS711 | MetaboLights
ProteomicsAssessing protein sequence database suitability using de novo sequencing
The analysis of samples from unsequenced and/or understudied species as well as samples where the proteome is derived from multiple organisms poses two key questions. The first is whether the proteomic data obtained from an unusual sample type even contains peptide tandem mass spectra. The second ...
ORGANISM(S): glacier metagenome Hydrolagus colliei Diaphorina citri (Asian citrus psyllid) Homo sapiens (Human) marine metagenome Ursus deningeri Caenorhabditis elegans Leucoraja erinacea 
2019-11-20 | PXD015083 | Pride
Fasta Proteomics Metaproteomics 
TranscriptomicsRNA-Seq based characterization of long non-coding RNA involved in respiratory viruses pathogenesis
We aimed at systematically inferring the regulatory functions of host lncRNAs in response to influenza A virus (IAV) and severe acute respiratory syndrome coronavirus (SARS-CoV) in the mouse model, using a ‘guilt-by-association’ approach which relies on finding which lncRNAs have similar expression ...
ORGANISM(S): Mus musculus 
2014-05-05 | E-GEOD-52405 | biostudies-arrayexpress
TranscriptomicsMontastraea faveolata bleaching study
This SuperSeries is composed of the following subset Series: GSE10630: Mfaveolata single-time point bleaching experiment GSE10632: Mfaveolata time course bleaching experiment Keywords: SuperSeries Refer to individual Series
ORGANISM(S): Montastraea faveolata 
2008-05-31 | E-GEOD-10680 | biostudies-arrayexpress
UnknownSleep and Alertness in a Duty-Hour Flexibility Trial in Internal Medicine.
Not available
S-EPMC6457111 | biostudies-literature
TranscriptomicsExpression of known and predicted genes in tissues of Tetraodon nigroviridis (pufferfish)
Expression of known and predicted genes in tissues of Tetraodon nigroviridis (pufferfish) pooled from multiple healthy individuals. Two-colour experiments with two different tissues hybridized to each array. Each tissue is arrayed in replicate with dye swaps. Tissues: Beak, Brain, Calvaria, Connecti...
ORGANISM(S): Tetraodon nigroviridis 
2010-06-19 | E-GEOD-12976 | biostudies-arrayexpress
TranscriptomicsMfaveolata single-time point bleaching experiment
The declining health of coral reefs worldwide is likely to intensify in response to continued anthropogenic disturbance from coastal development, pollution, and climate change. In response to these stresses, reef-building corals may exhibit bleaching, which marks the breakdown in symbiosis between ...
ORGANISM(S): Montastraea faveolata 
2008-05-31 | E-GEOD-10630 | biostudies-arrayexpress
ModelsA Mathematical Model of Metabolism and Regulation Provides a Systems-Level View of the Oxygen Response of Escherichia coli
A Mathematical Model of Metabolism and Regulation Provides a Systems-Level View of the Oxygen Response of Escherichia coli
2014-03-18 | 23 | FAIRDOMHub
TranscriptomicsMfaveolata time course bleaching experiment
The declining health of coral reefs worldwide is likely to intensify in response to continued anthropogenic disturbance from coastal development, pollution, and climate change. In response to these stresses, reef-building corals may exhibit bleaching, which marks the breakdown in symbiosis between ...
ORGANISM(S): Montastraea faveolata 
2008-05-31 | E-GEOD-10632 | biostudies-arrayexpress
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