Han Kim K - OmicsDI

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Unknown (2076)
Proteomics (55)
Transcriptomics (40)
Genomics (38)
Metabolomics (6)
Models (1)
Other (1)

Organisms

Homo sapiens (48)
Caenorhabditis elegans (23)
Mus musculus (19)
Zea mays (4)
Gallus gallus (3)
Oryza sativa (2)
Rattus norvegicus (2)
Spalax carmeli (1)
Nannospalax galili (1)
Drosophila mojavensis (1)
Heterocephalus glaber (1)
Oryza sativa Japonica Group (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Oryctolagus cuniculus (1)
Staphylococcus aureus (1)
Sus scrofa (1)
Sus scrofa domesticus (1)

Organisms

Lactiplantibacillus plantarum (1)

Repository

biostudies-arrayexpress (67)
pride (34)
PAXDB (19)
EGA (10)
MetaboLights (5)
MassIVE (2)
BioModels (1)
GNPS (1)
GPMDB (1)
ENA (1)

Tissue

Blood plasma (6)
Brain (4)
Epithelial cell (4)
Breast (3)
Cell culture (3)
Blood cell (2)
Kidney (2)
Neuron (2)
Stem cell (2)
Blood serum (1)
Breast cancer cell line (1)
Fibroblast (1)
Liver (1)
Microglial cell (1)
Ovary epithelium (1)
Pituitary gland (1)
Retina (1)
Retinal cell (1)
Skeletal muscle tissue (1)
Urinary bladder (1)
Urinary bladder cancer cell (1)
Urine (1)

Disease

Bladder transitional cell carcinoma (3)
Breast cancer (3)
Craniopharyngioma (2)
Malignant neoplasm of ovary (2)
Not Available (1)
Breast secretory carcinoma (1)
COVID-19 (1)
Chronic kidney disease (1)
Cockayne syndrome (1)
Disease free (1)
Mental depression (1)
Mild cognitive impairment (1)
Myopia (1)
Preterm premature rupture of the membranes (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (25)
Mass spectrometry (5)
Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (5)
SWATH MS (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Q Exactive Plus (2)
Illumina NovaSeq X (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
Orbitrap Eclipse (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
MS Imaging - (1)

Publication Date

2011 (30)
2015 (27)
2021 (8)
2013 (8)
2023 (8)
2022 (8)
2010 (7)
2026 (6)
2024 (4)
2025 (3)
2014 (3)
2009 (3)
2018 (3)
2020 (3)
2008 (2)
2019 (2)
2016 (1)
2012 (1)
2007 (1)
2017 (1)

UNIPROT ID/AC

9544.ENSMMUP00000000740 (19)
9544.ENSMMUP00000001377 (19)
9544.ENSMMUP00000001769 (19)
9544.ENSMMUP00000001915 (19)
9544.ENSMMUP00000002527 (19)
9544.ENSMMUP00000002781 (19)
9544.ENSMMUP00000003585 (19)
9544.ENSMMUP00000003611 (19)
9544.ENSMMUP00000004046 (19)
9544.ENSMMUP00000004823 (19)
9544.ENSMMUP00000005597 (19)
9544.ENSMMUP00000005753 (19)
9544.ENSMMUP00000005797 (19)
9544.ENSMMUP00000005910 (19)
9544.ENSMMUP00000006390 (19)
9544.ENSMMUP00000006423 (19)
9544.ENSMMUP00000007902 (19)
9544.ENSMMUP00000008373 (19)
9544.ENSMMUP00000008494 (19)
9544.ENSMMUP00000008956 (19)
9544.ENSMMUP00000009144 (19)
9544.ENSMMUP00000009462 (19)
9544.ENSMMUP00000009900 (19)
9544.ENSMMUP00000010357 (19)
9544.ENSMMUP00000010407 (19)
9544.ENSMMUP00000010774 (19)
9544.ENSMMUP00000010832 (19)
9544.ENSMMUP00000010920 (19)
9544.ENSMMUP00000011307 (19)
9544.ENSMMUP00000011868 (19)

CHEBI ID

CHEBI:11814 (1)
CHEBI:15033 (1)
CHEBI:18064 (1)
CHEBI:19545 (1)
CHEBI:19692 (1)
CHEBI:1989 (1)
CHEBI:19975 (1)
CHEBI:20124 (1)
CHEBI:20417 (1)
CHEBI:20484 (1)
CHEBI:20544 (1)
CHEBI:20680 (1)
CHEBI:2097 (1)
CHEBI:22413 (1)
CHEBI:2332 (1)
CHEBI:23875 (1)
CHEBI:2458 (1)
CHEBI:24804 (1)
CHEBI:25974 (1)
CHEBI:26007 (1)
CHEBI:27327 (1)
CHEBI:27370 (1)
CHEBI:27421 (1)
CHEBI:27608 (1)
CHEBI:2782 (1)
CHEBI:27959 (1)
CHEBI:27978 (1)
CHEBI:2806 (1)
CHEBI:28074 (1)
CHEBI:28474 (1)

Metabolite Name

13Z-Docosenamide (2)
Auxin a (2)
Choline (2)
(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Cladielline (1)
(-)-Dilophol (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(1R,2R)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1R,2R,4S)-p-Menthane-1,2,8-triol 8-glucoside (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(22E)-3beta-Hydroxy-5alpha-chola-7,22-dien-24-oic Acid (1)
(2E,4Z)-Decadienoylcarnitine (1)
(2R*,3R*)-1,2,3-Butanetriol (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2S,4S)-Monatin (1)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (1)
(3b,6b,8b,12a)-8,12-Epoxy-7(11)-eremophilene-6-angeloyloxy-8,12-dimethoxy-3-ol (1)
(4E,15E)-Bilirubin (1)
(4E,8E,10E-d18:3)sphingosine (1)
(5alpha,8beta,9beta)-5,9-Epoxy-3,6-megastigmadien-8-ol (1)
(6E,8E,10R,12Z)-10-Hydroxy-3-oxooctadecatrienoic acid (1)
(6E,9E,12E,15E,18E,21E)-tetracosa-6,9,12,15,18,21-hexaenoic acid (1)
(6beta,8alpha)-6-Hydroxy-7(11)-eremophilen-12,8-olide (1)
(7Z)-14-hydroxy-10,13-dioxoheptadec-7-enoic acid (1)
(9R,10S,12Z)-9,10-Dihydroxy-8-oxo-12-octadecenoic acid (1)
(9R,13R)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoic acid (1)
(9S,13S)-1a,1b-dihomo-jasmonic acid (1)

IsPrivate

False (1)

First Public Date

2020 (1)

Modelling Approach

Constraint-based model (1)

Study type

ChIP-seq (25)
Transcription profiling by array (19)
RNA-seq of coding RNA (14)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Plant - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2023 (261)
2025 (256)
2021 (242)
2022 (224)
2024 (222)
2020 (170)
2018 (118)
2019 (113)
2017 (101)
2015 (77)
2016 (72)
2014 (60)
2011 (58)
2013 (40)
2026 (35)
2012 (31)
2010 (22)
2009 (20)
2008 (12)
2007 (3)
2006 (2)
2005 (2)
2004 (1)
2001 (1)

Lab affiliation

Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (11)
Proteomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (2)
Proteomics core facility, Seoul National University Hospital (2)
Yonsei university (2)
Center for Theragnosis, Korea Institute of Science and Technology, Republic of Korea (1)
Colleage of Medicine, Seoul National University Seoul National University Hospital (1)
Department of Biotechnology, Stem cell and biomaterial engineering Lab, Yonsei University, Republic of Korea. (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Life Science, College of Natural Sciences, Ajou University, 206, Worldcup-ro, Yeongtong-gu, Suwon, Gyeoggi-do 16499, Korea (1)
Department of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea (1)
Department of Ophthalmology, Yongin Severance Hospital, Yonsei University College of Medicine, Yongin, Korea (1)
Department of Psychiatry, Dankook University Hospital (1)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Max Planck Institute for Molecular Biomedicine Bioanayltical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany (1)
Proteomics Center, Erasmus University Medical Center, Rotterdam - NL (1)
Proteomics and Metabolomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (1)
Proteomics core facility, Biomedical research institute, Seoul national university hospital (1)
Proteomics core facility, Biomedicial Research Institute, Seoul National University Hospital (1)
School of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea Center for RNA Research, Institute of Basic Science, Seoul National University, Seoul, 08826, Republic of Korea (1)
The University of Texas MD Anderson Cancer Center (1)
Yonsei Proteome Research Center (1)

Tags

xref:PubMed:21275795 (1)
xref:PubMed:31747330 (1)
xref:PubMed:34316477 (1)

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Quantitative proteomic analysis of plasma in major mental disorders

Emerging high-throughput proteomic technologies have recently been considered as a powerful means of identifying substrates involved in mood disorders. We performed proteomic profiling using liquid chromatography-tandem mass spectrometry to identify dysregulated proteins in plasma samples of 44, 49,...

ORGANISM(S): Homo sapiens (Human)

2022-02-16 | PXD028841 | Pride

Corrigenda: Han S-Y, Kim J-K, Kai Y, Senou H (2017) Seahorses of the Hippocampus coronatus complex: taxonomic revision, and description of Hippocampus haema, a new species from Korea and Japan (Teleostei, Syngnathidae). ZooKeys 712: 113-139. https://doi.org/10.3897/zookeys.712.14955.

Not available

S-EPMC5935769 | biostudies-literature

Expression data from kidneys of rats with and without cisplatin treatment

We investigated an acute kidney injury (AKI) model in rats induced by cisplatin (Cp) administration. The cisplatin is widely used since its biochemical and histopathological characteristics are representative of drug-induced AKI in humans. Male Wistar rats were dosed once ip with 0, 1 and 3 mg/kg ...

ORGANISM(S): Rattus norvegicus

2016-08-23 | E-GEOD-85957 | biostudies-arrayexpress

eDNA- and eRNA-Based Detection of 2-Methylisoborneol-Producing Cyanobacteria and Intracellular Synthesis Dynamics in Freshwater Ecosystem.

Not available

S-EPMC12561784 | biostudies-literature

Health Literacy and Outcomes of a Community-Based Self-Help Intervention: A Case of Korean Americans With Type 2 Diabetes.

Not available

S-EPMC7266039 | biostudies-literature

Human-specific HERV-K insertion causes genomic variations in the human genome.

Not available

S-EPMC3625200 | biostudies-literature

Variability in Total Cholesterol Is Associated With the Risk of End-Stage Renal Disease: A Nationwide Population-Based Study.

Not available

S-EPMC6349220 | biostudies-literature

Runx3 Restoration Regresses K-Ras-Activated Mouse Lung Cancers and Inhibits Recurrence.

Not available

S-EPMC10605764 | biostudies-literature

In-depth proteome profiling of kidney in 5/6 Nephrectomy rat model

Chronic kidney disease (CKD) is characterized by a slow and gradual loss of kidney function, with glomerular filtration loss over months or years, inevitably leading to end-stage renal disease. The renal failure resulting from this irreversible process derives from fibrotic lesions of each compartme...

ORGANISM(S): Rattus norvegicus (Rat)

2021-01-19 | PXD016447 | Pride

Kidney Rat Chronic renal failure Lc-msms

Human Endogenous Retrovirus (HERV)-K env Gene Knockout Affects Tumorigenic Characteristics of nupr1 Gene in DLD-1 Colorectal Cancer Cells.

Not available

S-EPMC8070087 | biostudies-literature

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2217 Results

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