Harris M S H MS

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Unknown (595)
Proteomics (35)
Transcriptomics (14)
Metabolomics (6)
Genomics (2)

Organisms

Homo sapiens (28)
Mus musculus (6)
Bos taurus (2)
Picea sitchensis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Streptococcus pneumoniae (1)
Caenorhabditis elegans (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Aspergillus nidulans (1)
Bacteria (1)
Bifidobacterium pseudolongum subsp. globosum DSM 20092 (1)
Chlorella sp. SAG 211-18 (1)
Clostridium autoethanogenum (1)
Escherichia coli K-12 (1)
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (1)
Porphyromonas gingivalis (1)
Theileria parva (1)
Trichoderma asperellum CBS 433.97 (1)
Trichoderma atroviride IMI 206040 (1)
Trichoderma guizhouense (1)
Trichoderma parepimyces (1)
Trichoderma reesei QM6a (1)
Trichoderma virens Gv29-8 (1)

Repository

pride (33)
biostudies-arrayexpress (15)
MetaboLights (6)
PAXDB (2)
EGA (1)

Tissue

Cell culture (6)
Blood plasma (3)
Blood serum (3)
Brain (3)
Kidney (3)
Cell suspension culture (2)
Liver (2)
Urine (2)
B cell (1)
Bile (1)
Bile duct (1)
Blood-lymph (1)
Bone marrow (1)
Colon (1)
Culture condition:CD4+ cell (1)
Epithelial cell (1)
Lung (1)
Lymph node (1)
Muscle (1)
Pancreas (1)
Photosynthetic cell (1)
Prokaryotic cell (1)
Skin (1)
Spleen (1)
Stem cell (1)
T cell (1)

Disease

Brain cancer (2)
Acute leukemia (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Colon cancer (1)
Diabetes mellitus (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Inflammatory bowel disease (1)
Lung carcinoma (1)
Malignant mesothelioma (1)
Melanoma (1)
Neuroblastoma (1)
Pancreatic cancer (1)
Peripheral primitive neuroectodermal tumor (1)
Prostate adenocarcinoma (1)
Renal Wilms' tumor (1)
Retinoblastoma (1)
Stomach cancer (1)
Synovial sarcoma (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (20)
Bottom-up proteomics (8)
Mass spectrometry (6)
SWATH MS (4)
Data-independent acquisition (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Direct infusion MS - positive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Direct infusion MS - alternating (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - negative - reverse phase (1)
MS Imaging - (1)
Q Exactive (1)

Publication Date

2018 (7)
2023 (7)
2022 (6)
2021 (5)
2010 (5)
2025 (5)
2026 (5)
2013 (4)
2020 (4)
2012 (2)
2015 (2)
2024 (2)
2011 (1)
2006 (1)

UNIPROT ID/AC

10116.ENSRNOP00000001467 (2)
10116.ENSRNOP00000004127 (2)
10116.ENSRNOP00000007070 (2)
10116.ENSRNOP00000007645 (2)
10116.ENSRNOP00000010798 (2)
10116.ENSRNOP00000019755 (2)
10116.ENSRNOP00000028732 (2)
10116.ENSRNOP00000031360 (2)
10116.ENSRNOP00000050143 (2)
10116.ENSRNOP00000052803 (2)
10116.ENSRNOP00000054637 (2)
10116.ENSRNOP00000059667 (2)
10116.ENSRNOP00000060017 (2)
10116.ENSRNOP00000061650 (2)
10116.ENSRNOP00000064401 (2)
10116.ENSRNOP00000064646 (2)
10116.ENSRNOP00000065372 (2)
10116.ENSRNOP00000065625 (2)
10116.ENSRNOP00000065704 (2)
10116.ENSRNOP00000066126 (2)
10116.ENSRNOP00000066155 (2)
10116.ENSRNOP00000066428 (2)
10116.ENSRNOP00000067288 (2)
10116.ENSRNOP00000067711 (2)
1433B_RAT (2)
1433E_RAT (2)
1433F_RAT (2)
1433G_RAT (2)
1433T_RAT (2)
1433Z_RAT (2)

CHEBI ID

CHEBI:16113 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:30769 (2)
CHEBI:37024 (2)
CHEBI:49033 (2)
CHEBI:7916 (2)
CHEBI:10072 (1)
CHEBI:10362 (1)
CHEBI:113542 (1)
CHEBI:131434 (1)
CHEBI:132004 (1)
CHEBI:132007 (1)
CHEBI:132188 (1)
CHEBI:132948 (1)
CHEBI:132966 (1)
CHEBI:132983 (1)
CHEBI:133005 (1)
CHEBI:133026 (1)
CHEBI:133028 (1)
CHEBI:133032 (1)
CHEBI:133046 (1)
CHEBI:133066 (1)
CHEBI:133089 (1)
CHEBI:133092 (1)
CHEBI:133096 (1)
CHEBI:133115 (1)
CHEBI:133119 (1)
CHEBI:133172 (1)
CHEBI:133176 (1)

Metabolite Name

N1-Methyl-2-pyridone-5-carboxamide (2)
Pantothenic acid (2)
()-Pelletierine (1)
(+)-Isomenthone (1)
(1S,4S)-Dihydrocarvone (1)
(1aalpha,2beta,3alpha,11calpha)-1a,2,3,11c-Tetrahydro-6,11-dimethylbenzo[6,7]phenanthro[3,4-b]oxirene-2,3-diol (1)
(3S)-3,6-Diaminohexanoate (1)
(3S,6E)-Nerolidol (1)
(3Z,6Z)-3,6-Nonadienal (1)
(E)-2-Penten-1-ol (1)
(E)-2-octenal (1)
(R)-3-hydroxybutyrylcarnitine (1)
(S)-2-Methylbutanal (1)
1,2-Dihydronaphthalene-1,2-diol (1)
1-Methyladenosine (1)
1-Methylguanosine (1)
1-Penten-3-ol (1)
1-linoleoyl-GPA (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
11,12-DiHETrE (1)
11,14,17-Eicosatrienoic acid (1)
11Z-Eicosenoic acid (1)
12,13-DiHOME (1)
12S-HHT (1)
13-L-Hydroperoxylinoleic acid (1)
15H-11,12-EETA (1)
16-Hydroxy hexadecanoic acid (1)
16a-hydroxy DHEA 3-sulfate (1)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA (4)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (73)
2022 (68)
2023 (51)
2025 (48)
2024 (44)
2020 (39)
2015 (39)
2014 (32)
2013 (30)
2019 (28)
2018 (27)
2016 (27)
2012 (25)
2011 (21)
2017 (18)
2010 (15)
2026 (9)
2008 (7)
2009 (6)
2006 (2)
2007 (1)

Lab affiliation

University of Victoria (5)
Novartis Institute of Biomedical Research, Cambridge, MA (2)
1Seer, Inc., Redwood City, CA 94065, USA; 4Center for Nanomedicine and Department of Anesthesiology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA (1)
Bavarian Center for Biomolecular Mass Spectrometry, TUM School of Life Sciences, Technical University Munich (TUM), Gregor-Mendel-Straße 4, 85354 Freising, GERMANY (1)
Boston University School of Medicine Center for Biomedical Mass Spectrometry (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (1)
Department of Immunology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Daegu, Republic of Korea (1)
ERA Chair in Gas Fermentation Technologies, Institute of Technology, University of Tartu (1)
Head of Proteomics, Beatson Institute for Cancer Research (1)
Instituto de Bioquimica Vegetal y Fotosintesis CSIC (1)
Jiangsu Academy of Agricultural Sciences (1)
Marten Lab Chemical, Biochemical, and Environmental Engineering University of Maryland Baltimore County Baltimore, MD 21250 (1)
Mass Spectrometry Research Center Departments of Biochemistry, Chemistry, Pharmacology, Medicine Vanderbilt University Nashville TN, USA (1)
Novartis Institute for Biomedical Research, Cambridge MA (1)
Novartis Institute for Biomedical Research, Cambridge, MA (1)
Novartis Institute of Biomedical Research, Cambridge MA (1)
Pharmacology, Harris Lab, Univeristy of Virginia, U.S.A. (1)
Regional Medical Research Centre, Indian Council of Medical Research, Port Blair, India (1)
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney, NSW 2006, Australia (1)
Seer, Inc., Redwood City, CA 94065, USA (1)
Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital,McGill University, Montréal, Québec,Canada (1)
Sorbonne Université, INSERM UMRS-938, Centre de Recherche Saint-Antoine, CRSA, AP-HP, Paris, France. (1)
The Francis Crick Institute 1 Midland Road London, NW1 1AT UK (1)
The Scripps Research Institute (1)
University of Colorado - Skaggs School of Pharmacy (1)
University of Veterinary Medicine Vienna (1)
Weill Cornell Medical College, New York City (1)

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Comparative Genomic Analysis of PhoP Regulon in S. Typhi and S. Typhimurium

Transcriptional profiling of three sequenced S. enterica strains: S. Typhimurium LT2, S. Typhi CT18, and S. Typhi Ty2 in PhoP-inducing and non-inducing conditions in vitro, and compared these results to profiles of phoP-/Q- mutants derived from S. Typhimurium LT2 and S. Typhi Ty2. Two-condition expe...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

2010-05-06 | E-GEOD-17670 | biostudies-arrayexpress

Multi-dimensional leaf phenotypes reflect root system genotype in grafted grapevine over the growing season

BACKGROUND: Modern biological approaches generate volumes of multi-dimensional data, offering unprecedented opportunities to address biological questions previously beyond reach owing to small or subtle effects. A fundamental question in plant biology is the extent to which below...

2022-01-07 | MTBLS2831 | MetaboLights

Evaluation of ambient mass spectrometry tools for assessing inherent postharvest pepper quality

Horticulturists are interested in evaluating how cultivar, environment, or production system inputs can affect postharvest quality. Ambient mass spectrometry approaches enable analysis of minimally processed samples under ambient conditions and offer an attractive high-throughput alternative for ...

2022-03-04 | MTBLS2587 | MetaboLights

miRNA contributions to pediatric-onset multiple sclerosis inferred from GWAS.

Not available

S-EPMC6562070 | biostudies-literature

Postia placenta MAD-698 gene expression in different media

Transscript profiles of Postia placenta grown on different substrates were analyszed. Array design was based on the DoE's Joint Genome Institute's gene models for P. placenta version 1. The research goal is to identtify genes essential for cellulose depolymerization. Keywords: Culture condition com...

ORGANISM(S): Postia placenta

2010-05-14 | E-GEOD-12540 | biostudies-arrayexpress

DNA vaccination series 1

Repeated comparisons of gene expression between individual RNA samples from DNA vaccinated rats vs controls. Keywords: repeat sample

ORGANISM(S): Rattus norvegicus

2010-06-05 | E-GEOD-1538 | biostudies-arrayexpress

An HDX-MS optimised approach to characterise nanobodies as tools for biochemical and structural studies

Given the far-reaching applications of nanobodies, a stream-lined approach to characterizing nanobodies tailored to its intended application is warranted. Camelids can produce a large number of antibodies that can bind to a host of epitopes spanning the entire protein of interest, making identificat...

ORGANISM(S): Homo sapiens (Human)

2021-09-22 | PXD025207 | Pride

Comparative exo-proteomic analysis of Trichoderma antagonists induced by oomycete mycelium highlights diverse antagonism strategies

Plant-beneficial fungi from the genus Trichoderma (Hypocreales, Ascomycota) can control oomyceteous plant-pathogenic Pythium myriotylum (Peronosporales, Oomycota) and thus serve as bioeffectors for the eco-friendly products of crop protection. However, the underlying mechanisms of microbe-microbe in...

ORGANISM(S): Trichoderma asperellum CBS 433.97 Trichoderma virens Gv29-8 Hypocrea jecorina (strain QM6a) (Trichoderma reesei) Trichoderma atroviride IMI 206040 Trichoderma parepimyces Trichoderma guizhouense

2024-07-19 | PXD051895 | Pride

Trichoderma Exo-proteins Hydrolyase Antagonism

Impact of acute lymphoblastic leukemia induction therapy: findings from metabolomics on non-fasted plasma samples from a biorepository

INTRODUCTION: Acute lymphoblastic leukemia (ALL) is among the most common cancers in children. With improvements in combination chemotherapy regimens, the overall survival has increased to over 90%. However, the current challenge is to mitigate adverse events resulting from the c...

2021-08-12 | MTBLS2394 | MetaboLights

Evidence for a causal relationship between low vitamin D, high BMI, and pediatric-onset MS.