Het - OmicsDI

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Unknown (923)
Genomics (487)
Transcriptomics (281)
Proteomics (29)
Metabolomics (7)
Methylation profiling (6)
Clinical (4)
Other (4)
Genomic (1)

Organisms

Mus musculus (194)
Homo sapiens (86)
Schizophyllum commune H4-8 (18)
Mycobacterium tuberculosis SP7 (18)
Drosophila melanogaster (16)
Rattus norvegicus (8)
Streptomyces coelicolor (5)
Glycine max (4)
Podospora anserina (4)
Oryza sativa (2)
Gallus gallus (2)
Candida albicans (2)
Sus scrofa (2)
Drosophila sechellia (1)
Leishmania donovani (1)
Anguilla anguilla (1)
Lupinus albus (1)
Medicago sativa (1)
mouse gut metagenome (1)
Zea mays (1)
Heterocephalus glaber (1)
Caenorhabditis elegans (1)
Cryptococcus neoformans (1)
Triticum aestivum (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Cryphonectria parasitica (1)
Trichoderma atroviride (1)
Nostoc sp. PCC 7120 = FACHB-418 (1)
Neurospora crassa (1)

Organisms

Mus musculus (293)
Homo sapiens (56)
Drosophila melanogaster (13)
Danio rerio (5)
Podospora anserina (2)
Sclerotinia sclerotiorum 1980 UF-70 (2)
Mesocricetus auratus (2)
Rattus norvegicus (2)
Cryphonectria parasitica (1)
Mustela putorius furo (1)
Neurospora crassa (1)
Nothobranchius furzeri (1)
Trichoderma atroviride (1)
Mus (1)
Sus scrofa (1)
mouse gut metagenome (1)

Repository

ENA (440)
biostudies-arrayexpress (188)
geo (144)
pride (18)
EGA (6)
MassIVE (6)
jPOST (4)
MetabolomicsWorkbench (4)
MetaboLights (3)
dbGaP (1)
iProX (1)

Tissue

Brain (8)
Kidney (2)
Testis (2)
Eye tissue (1)
Blood (1)
Striatum (1)
Regional part of brain (1)
Endothelial cell (1)
Cerebral cortex neuron (1)
Plant cell (1)
Neuron (1)
Cardiac muscle cell (1)
Heart (1)
Stem cell (1)
Liver (1)

Disease

Angiosarcoma (2)
Heart disease (2)
The participants enrolled in this study will all undergo major upper abdominal surgery (i.e. mostly Pylorus Preserving Pancreatico Duodenectomy or whipple procedure) mostly for pancreatic cancer, papillary carcinoma or pancreatitis. However, the indication for which the IMP is administered is intestinal ischemia and reperfusion. (1)
Induction chemotherapy for Peritoneal Carcinomatosis of Colorectal Cancer (1)
Peritoneal metastases, peritoneal carcinomatoris, colorectal cancer, imaging techniques, fluorescence, narrow-band imaging, ICG, 5-ALAperitoneale metastasen, peritonitis carcinmatosa, colorectaal carcinoom, beeldvormende technieken, fluorescentie (1)
Metastatic colorectal cancer (1)
Eye disease (1)
Early infantile epileptic encephalopathy (1)
Spinal muscular atrophy (1)
Huntington Disease (1)
Autism spectrum disorder (1)
Brain cancer (1)
Cystic fibrosis (1)
Disease free (1)

Technology Type

Mass Spectrometry (22)
Bottom-up proteomics (7)
Shotgun proteomics (7)
Data-independent acquisition (4)
ESI (3)
Data-dependent acquisition (3)
Mass spectrometry (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
EI (1)
SWATH MS (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (6)
Illumina NovaSeq 6000 (6)
Illumina HiSeq 2000 (6)
NextSeq 550 (4)
Illumina HiSeq 4000 (3)
NextSeq 500 (2)
Orbitrap Fusion Lumos (2)
Nanodrop 2000c spectrophotometer (1)
Complete Genomics (1)
418 [Affymetrix] (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Illumina TruSeq® Stranded mRNA Library Preparation Kit (Illumina) (1)
Illumina HiSeq 3000 (1)
LTQ Velos ETD (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
Q Exactive (1)
Liquid Chromatography MS - alternating (1)
LTQ Orbitrap Discovery (Thermo Scientific) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (41)
2012 (38)
2014 (36)
2013 (31)
2021 (21)
2010 (20)
2023 (18)
2015 (18)
2024 (17)
2019 (17)
2016 (16)
2022 (16)
2011 (15)
2020 (13)
2018 (13)
2017 (12)
2026 (11)
2008 (5)
2007 (2)
2009 (2)
2004 (1)

CHEBI ID

CHEBI:21167 (1)
CHEBI:57812 (1)
CHEBI:18075 (1)
CHEBI:18066 (1)
CHEBI:17713 (1)
CHEBI:17200 (1)
CHEBI:17013 (1)
CHEBI:15713 (1)
CHEBI:16264 (1)
CHEBI:17659 (1)
CHEBI:17858 (1)
CHEBI:17677 (1)
CHEBI:17239 (1)
CHEBI:16960 (1)
CHEBI:16695 (1)
CHEBI:16750 (1)
CHEBI:17361 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:15422 (1)
CHEBI:16027 (1)
CHEBI:16761 (1)
CHEBI:17345 (1)
CHEBI:17596 (1)

Metabolite Name

GDP-Hexose (1)
UDPAG (1)
Thymidylic acid (1)
Guanylate (1)
5'-adenylic acid (1)
Uridine-diphosphate (1)
Cytidylic acid (1)
Thr-Tyr-Asp-Arg-Asn (1)
[(2R,3S,4S,5R)-6-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-[[(E)-2-methylbut-2-enoyl]oxymethyl]-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxy-5-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]methyl (E)-2-methylbut-2-enoate (1)
[Met5,Lys6] alpha-Neo-Endorphin (1-6) (1)
Ile-Val-Ile-Phe-Asn (1)
2,4,5,6(1H,3H)-Pyrimidinetetrone,5-[2-(2-chlorophenyl)hydrazone] (1)
Bullatalicin (1)
15-deoxy--12,14-PGJ2-d4 (1)
2-docosanamidoethanesulfonic acid (1)
2,6,10,14-Tetramethyl-16-(5-methyl-3,6-dioxo-1,4-cyclohexadiene-1-yl)-2-hydroxy-6,10,14-hexadecatriene-3-one (1)
[(2S)-2-[9-(3,4-dimethyl-5-propylfuran-2-yl)nonanoyloxy]-3-hydroxypropyl] 11-(3,4-dimethyl-5-propylfuran-2-yl)undecanoate (1)
(2S,3R,4R,4aR,6aR,6bS,8aS,14bR)-2,3-dihydroxy-4,6a,6b,11,11,14b-hexamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicene-4,8a-dicarboxylate (1)
[(2S)-2-hexadecanoyloxy-3-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-[[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxan-2-yl]oxypropyl] (Z)-octadec-9-enoate (1)
[10,13-dimethyl-17-(6-methylheptan-2-yl)-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-yl] 3-(3-methyl-5-pentylfuran-2-yl)propanoate (1)
(2R,3R,4R,5R)-2-[(9R)-9,13-dihydroxytridecyl]-5-(hydroxymethyl)pyrrolidine-3,4-diol (1)
N-Arachidonoyl-3-hydroxy-Aminobutyric Acid (1)
(1S,4aS,10aR)-6-[(4bS,8S,8aR)-8-carboxy-2-hydroxy-4b,8-dimethyl-1-propan-2-yl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]-7-hydroxy-1,4a-dimethyl-8-propan-2-yl-2,3,4,9,10,10a-hexahydrophenanthrene-1-carboxylic acid (1)
NCGC00384622-01_C34H42O14_(1S,2S,4S,5R,6R,7S,9R,12R)-12-Acetoxy-6-(acetoxymethyl)-2-hydroxy-2,10,10-trimethyl-5-[(2-methylbutanoyl)oxy]-11-oxatricyclo[7.2.1.0~1,6~]dodecane-4,7-diyl di(3-furoate) (1)
(1'R,2R,3S,4'S,6S,8'R,10'E,12'S,13'S,14'E,16'E,20'R,21'R,24'S)-2-butan-2-yl-21',24'-dihydroxy-12'-[(2R,4S,5S,6S)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy-3,11',13',22'-tetramethylspiro[2,3-dihydropyran-6,6'-3,7,19-trioxatetracyclo[15.6.1.14,8.020,24]pentacosa-10,14,16,22-tetraene]-2'-one (1)
(4'Z,7'Z,10'Z,13'Z,16'Z,19'Z)-4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoic acid, diester with 1,2,3-propanetriol (1)
3-Oxolanosta-7,24Z-dien-26-oic acid (1)
[(2R,3R)-5,7-dihydroxy-2-[3,4,6-trihydroxy-5-oxo-8-[(2R,3S)-3,5,7-trihydroxy-3,4-dihydro-2H-chromen-2-yl]benzo[7]annulen-1-yl]-3,4-dihydro-2H-chromen-3-yl] 3,4,5-trihydroxybenzoate (1)
(Gal1-4GlcNAc)2-Sp (1)
Ala-Lys-Gly-Lys-Ser (1)

First Public Date

2025 (78)
2024 (55)
2021 (48)
2023 (37)
2014 (37)
2022 (36)
2026 (35)
2019 (30)
2017 (26)
2018 (22)
2020 (19)
2016 (8)
2015 (5)
2013 (4)

Study status

Ongoing (2)
Recruiting (1)
Completed (1)

Study type

Transcription profiling by array (97)
RNA-seq of coding RNA (36)
ChIP-seq (20)
Comparative genomic hybridization by array (4)
RNA-seq of non coding RNA (4)
Unknown experiment type (2)
Animal - High-throughput sequencing (2)
Bisulfite-seq (2)
4C (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
Interventional (2)
CUT&TAG (1)
ChIP-chip by tiling array (1)
Animal - Single-cell sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Other (1)
RNA-seq of coding RNA from single cells (1)
Not provided (1)
Observational (1)

Release Date

2022 (123)
2025 (103)
2021 (96)
2020 (87)
2024 (75)
2023 (72)
2019 (66)
2014 (65)
2012 (58)
2015 (49)
2013 (46)
2016 (42)
2017 (41)
2018 (39)
2010 (33)
2011 (30)
2007 (14)
2008 (13)
2026 (12)
2009 (12)
2006 (9)
2005 (8)
2003 (6)
2002 (4)
2004 (2)
1999 (2)
1998 (2)
2001 (1)
2000 (1)

Lab affiliation

Evotec (1)
Genetic and Molecular Basis of Neurodevelopmental Disorders, IST Austria, Klosterneuburg, Lower Austria, Austria (1)
Université Paris cité, CNRS, Institut Jacques Monod, F-75006 Paris, France (1)
JNU-HKUST Joint Laboratory for Neuroscience and Innovative Drug Research, College of Pharmacy, Jinan University, Guangzhou 510632, Guangdong, China. (1)
University of Lausanne, Department of Biomedical Sciences, Rue du Bugnon 7, 1005 Lausanne (1)
Biosciences Institute, Newcastle University, Newcastle, UK (1)
Research Institute for Microbial Diseases, Osaka University, Osaka, 565-0871, Japan (1)
IST (Institute of Science and Technology) Austria, Klosterneuburg, Lower Austria, Austria (1)
Jack Cole Chair in Pediatric Hematology/Oncology Professor, Department of Pediatrics McGill University (1)
Department of Microbiology, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India (1)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (1)
Director & Chair Institute of Human Genetics University Hospital Cologne Kerpener Str. 34 50931 Cologne Germany (1)
AstraZeneca (1)
Center for Drug Discovery, Baylor College of Medicine, Houston, TX Department of Pathology & Immunology, BCM, Houston, TX (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)

Location

Netherlands (4)

Keyword

Tranexmic acid (1)
OXALIPLATIN (1)
Xeloda (1)
Doxycycline (1)
Avastin (1)

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Transcription profiling of SKGT4 and HET-1A cell lines exposed to deoxycholic acid (DCA)

This SuperSeries is composed of the following subset Series: GSE13376: Exposure of Barrett's associated adenocarcinoma cell lines SKGT4 to deoxycholic acid (DCA) GSE13378: Exposure of squamous esophageal cell line HET-1A to deoxycholic acid (DCA) Refer to individual Series

ORGANISM(S): Homo sapiens

2010-03-02 | E-GEOD-13400 | biostudies-arrayexpress

The transcriptional profilling of the thermosensitive self-incompatible het-R het-V strain undergoing cell death by incompatibility

In the filamentous fungus Podospora anserina, cell death by incompatibility can be monitored using the conditional self-incompatible (SI) het-R het-V strain. SI strains are homokaryotic strains bearing incompatible het genes in all nuclei. The co-expression of these het genes triggers cell death in ...

ORGANISM(S): Podospora anserina

2013-01-01 | E-GEOD-21659 | biostudies-arrayexpress

Exposure of squamous esophageal cell line HET-1A to deoxycholic acid (DCA)

The involvment of bile acids such as deoxycholic acid (DCA) in gastro-esophageal reflux disease and subsequent Barrettâ??s metaplsia has been postulated. This study examines gene expression induced by exposure to DCA in esophageal cells and may be utilised in cross-comparisions with data derived fro...

ORGANISM(S): Homo sapiens

2010-02-28 | E-GEOD-13378 | biostudies-arrayexpress

The mechanism of toxicity in HET-S/HET-s prion incompatibility.

Not available

S-EPMC3531502 | biostudies-literature

ChIP-seq analysis of control and DOT1L HET cortical nuclei.

PRJNA1240293 | ENA

The transcriptional profilling of the thermosensitive self-incompatible het-R het-V strain undergoing cell death by incompatibility

ORGANISM(S): Podospora anserina

2013-01-01 | GSE21659 | GEO

Cyclophilin B deficiency causes abnormal dentin collagen matrix

To evaluate the effects of cyclophilin B deficiency on expression levels of collagen family members in dentin, we performed protein identification of cyclophilin B-WT, -Het, and -KO teeth after trypsin digestion.

ORGANISM(S): Mus Musculus (mouse)

2017-07-20 | PXD006021 | JPOST Repository

Elucidating a normal function of huntingtin by analysis of huntingtin-null mouse embryonic fibroblasts

The polyglutamine expansion in huntingtin (Htt) protein is a cause of Huntington’s disease (HD). Htt is an essential gene as deletion of the mouse Htt gene homolog (Hdh) is embryonic lethal in mice. Therefore, in addition to elucidating the mechanisms responsible for polyQ-mediated pathology, it i...

ORGANISM(S): Mus musculus

2008-04-12 | E-GEOD-11139 | biostudies-arrayexpress

(LCMS)/MS studies of prefrontal cortex synaptosomal fractions in Eef2 HET mice - eEF2 in the prefrontal cortex regulates excitatory synaptic transmission and social novelty behavior.

To investigate the protein expression changes at the synapse induced by Eef2 reduction, we performed (LCMS)/MS-based proteomic analysis in crude synaptosome preparations from the PFC of WT and Eef2 HET mice.

ORGANISM(S): Mus musculus (Mouse)

2022-08-15 | PXD034864 | Pride

ChIP-Seq for Nkx3-1 in whole mouse prostate

We report the genome-wide binding sites of the NK homeodomain transcription factor, Nkx3-1, in mouse prostate. Three different mouse genotypes were used: Nkx3-1 wild-type (WT), Nkx3-1 heterozygote (HET), and Nkx3-1 knock-out (KO). Two biological replicates were performed for WT and HET, and one repl...

ORGANISM(S): Mus musculus

2012-04-09 | E-GEOD-35971 | biostudies-arrayexpress

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