Heterozygosity - OmicsDI

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- (2)
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CHEBI ID

CHEBI:17895 (2)
CHEBI:140673 (1)
CHEBI:76923 (1)
CHEBI:78373 (1)
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CHEBI:50540 (1)
CHEBI:22998 (1)
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Metabolite Name

Riboflavin (2)
Cytosine (2)
5'-deoxy-5'(methylthio)adenosine (1)
N-acetyl muramic acid (1)
N-acetyl glutamic acid (1)
Glucosamine 6-phosphate (1)
3-mercapto-propionate (1)
[ring-13C6]-N-methylcheilanthifoline (1)
[ring-13C6]-N-methylscoulerine (1)
[ring-13C6]-chelerythrine (1)
[ring-13C6]-dihydrochelerythrine (1)
[ring-13C6]-allocryptopine (1)
[ring-13C6]-cis-N-methylcanadine (1)
[ring-13C6]-canadine (1)
[ring-13C6]-tetrahydrocolumbamine (1)
[ring-13C6]-sanguinarine (1)
[ring-13C6]-dihydrosanguinarine (1)
[ring-13C6]-protopine (1)
[ring-13C6]-N-methylstylopine (1)
[ring-13C6]-stylopine (1)
[ring-13C6]-cheilanthifoline (1)
[ring-13C6]-scoulerine (1)
[ring-13C6]-reticuline (1)
[ring-13C6]-3'-hydroxy-N-methyl-coclaurine (1)
[ring-13C6]-N-methylcoclaurine (1)
[ring-13C6]-coclaurine (1)
[ring-13C6]-norcoclaurine (1)
[ring-13C6]-dopamine (1)
[ring-13C6]-tyramine (1)
[ring-13C6]-4-hydroxyphenylacetaldehyde (1)

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Classification

fungi (6)
protozoa (1)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (165)
Comparative genomic hybridization by array (98)
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RNA-seq of coding RNA (32)
ChIP-seq (7)
Unknown experiment type (6)
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2003 (24)
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2000 (18)
2002 (17)
1999 (16)
1998 (5)
1997 (4)

Lab affiliation

Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (4)
Immunology Unit, Department of Cell Biology, Physiology and Immunology, Institut de Biotecnologia i Biomedicina (IBB), Universitat Autònoma de Barcelona (UAB), Bellaterra (Cerdanyola del Vallès), Spain Biosensing and Bioanalysis Group, Institut de Biotecnologia i Biomedicina (IBB), Universitat Autònoma de Barcelona (UAB), Bellaterra (Cerdanyola del Vallès), Spain (2)
Department of Chemistry, College of Letters & Science, University of Wisconsin-Madison, Madison, WI, 53706 Department of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, 53706 (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne (1)
Genome Stability Unit, St. Vincent’s Institute of Medical Research, Fitzroy, Australia (1)
Imperial College London (1)
Laboratoire de Génétique Ophtalmologique, INSERM U1163, Institut Imagine, Paris, France (1)
Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany (1)
Max Planck Institute for Immunobiology and Epigenetics (1)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Unit Röntgenstr. 20 48149 Münster Germany (1)
Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK. (1)
Personalis Inc., Menlo Park, USA. (1)
Proteomics Facility Max Planck Insitutte for Immunobiology and Epigenetics (1)
Proteomics Unit - Research Facility Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg (1)
The Epi-/Genome Lab, Department of Hematology, Rigshospitalet, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark (1)
Weizmann Institute of Science (1)

Location

United States (1)

Keyword

CAR T Cell Therapy (1)
Leukapheresis (1)
Next Generation Sequencing (1)
Immunotherapy (1)

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Combined arrayCGH and SNP-loss of heterozygosity analysis in cervical cancer

BACKGROUND: Cervical carcinoma develops as a result of multiple genetic alterations. Different studies investigated genomic alterations in cervical cancer mainly by means of metaphase comparative genomic hybridization (mCGH) and microsatellite marker analysis for the detection of loss of heterozygos...

ORGANISM(S): Homo sapiens

2010-06-05 | E-GEOD-8605 | biostudies-arrayexpress

Genotyping of human premalignant oral keratinocyte line SVpgC2a loss of heterozygosity (LOH) during FOXM1B-induced malignant transformation

Genome-wide SNP profilling for loss of heterozygosity (LOH) during FOXM1B-induced malignant transformation in a human premalignant oral keratinocyte line SVpgC2a. Experiment Overall Design: Eight FOXM1B-induced malignant clones (SVFN1-8) that grew in soft agar were grown as individual cell lines and...

ORGANISM(S): Homo sapiens

2009-06-23 | E-GEOD-11782 | biostudies-arrayexpress

A comprehensive Proteomic Investigation of Ebf1 Heterozygosity in pro-B lymphocytes utilizing Data Independent Acquisition

Early B cell factor 1 (EBF1) is one of the key transcription factors required for orchestrating B-cell lineage development. Although studies have shown that Ebf1 haploinsufficiency is involved in the development of leukemia, no study has been conducted that characterizes the global effect of Ebf1 he...

ORGANISM(S): Mus musculus (Mouse)

2017-12-20 | PXD008396 | Pride

Loss of heterozygosity drives adaptation in hybrid yeast

PRJNA376031 | ENA

8p Loss of Heterozygosity triggers metastasis and drug resistance

Chromosome arm deletions are frequently observed in human cancers. Such large-scale aberrations may trigger phenotypes distinct from those that arise by loss of single genes. Using TALEN-based genomic engineering, we generated cell models with targeted 8p loss-of-heterozygosity (LOH) that mimics an ...

ORGANISM(S): Homo sapiens

2015-05-21 | E-GEOD-68042 | biostudies-arrayexpress

Pan cancer investigation of human leukocyte antigen loss of heterozygosity

PRJNA800571 | ENA

Pan cancer investigation of human leukocyte antigen loss of heterozygosity

PRJNA800572 | ENA

SNP arrays in matched diagnosis/remission samples of normal karyotype-acute myeloid leukemia

We analysed, by last-generation high-resolution SNP arrays, Normal Karyotype (NK)-AML patients at diagnosis (Dx) and remission (R) phases, in order to determine the number of tumor-associated copy number abnormalities (CNAs) and copy neutral-loss of heterozygosity (CN-LOH) regions per patient and to...

ORGANISM(S): Homo sapiens

2010-12-31 | E-GEOD-21780 | biostudies-arrayexpress

Effect of DGCR8 knockout and heterozygosity pri-miRNA processing in PA-1 cells

PRJNA810449 | ENA

Loss of heterozygosity drives adaptation in hybrid yeast

CGH arrays for Smukowski Heil, et al MBE 2017. Hybridization is often considered maladaptive, but sometimes hybrids can invade new ecological niches and adapt to novel or stressful environments better than their parents. The genomic changes that occur following hybridization that facilitate genome r...

ORGANISM(S): Saccharomyces x bayanus Saccharomyces cerevisiae Saccharomyces uvarum Saccharomyces cerevisiae x Saccharomyces uvarum

2017-02-21 | GSE95086 | GEO

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