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ProteomicsGenome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals core metabolic functions and variability during early-life
An integrated metagenomics and metaproteomics investigation of human preterm infant gut microbiota.
ORGANISM(S): Gut Microbiota Of Human Preterm Infants 
2017-02-23 | MSV000080565 | MassIVE
TranscriptomicsContribution of cell-bound and cell-free cellulosomal versus non-cellulosomal systems in deconstruction of cellulosic biomass by Clostridium thermocellum
The high cellulose digestion capability of the anaerobic thermophilic bacterium, Clostridium thermocellum, can be attributed to its efficient glycoside hydrolase system, consisting of both a free-enzyme system and a cellulosomal system, wherein carbohydrate active enzymes (CAZymes) are organized by...
ORGANISM(S): Ruminiclostridium thermocellum DSM 1313 
2015-02-28 | E-GEOD-63883 | biostudies-arrayexpress
ProteomicsDiversity and specificity of extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic substrate
Diversity and specificity of extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic substrate
ORGANISM(S): Caldicellulosiruptor Bescii (ncbitaxon:31899) 
2017-12-22 | MSV000081856 | MassIVE
ProteomicsPacific Ocean metaproteomics, METZYME KM1128
Global metaproteomic analyses of microbial biomass from the upper water column of the Central Pacific Ocean. This dataset was used as a discovery dataset to identify peptide biomarkers for cyanobacterial populations for use in targeted metaproteomic calibrated multiple reaction monitoring (MRM) anal...
ORGANISM(S): Environmental Samples (ncbitaxon:318178) 
2021-11-05 | MSV000088323 | MassIVE
TranscriptomicsCharacterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
The adult human gut microbial community is typically dominated by two bacterial phyla (divisions), the Firmicutes and the Bacteroidetes. Little is known about the factors that govern the interactions between their members. Here we examine the niches of representatives of both phyla in vivo. Finishe...
ORGANISM(S): Bacteroides thetaiotaomicron 
2010-05-22 | E-GEOD-14737 | biostudies-arrayexpress
TranscriptomicsTranscriptional profile of B. theta and E. rectale growing in the cecum of mice fed different diets
The adult human gut microbial community is typically dominated by two bacterial phyla (divisions), the Firmicutes and the Bacteroidetes. Little is known about the factors that govern the interactions between their members. Here we examine the niches of representatives of both phyla in vivo. Finishe...
ORGANISM(S): Eubacterium rectale 
2010-05-22 | E-GEOD-14709 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Drosophila expressing the tetanus toxin light fragment (TET) throughout the nervous system
Background: Synaptic transmission is required for functional maturation of the CNS and to induce gene transcription involved in neuronal plasticity. Our aim is to identify genes that are transcriptionally regulated by synaptic transmission during development. cDNA microarrays will be used to compare...
ORGANISM(S): Drosophila melanogaster 
2004-05-07 | E-FLYC-2 | biostudies-arrayexpress
ProteomicsClostridium autoethanogenum isopropanol production via native plasmid pCA replicon
Clostridium autoethanogenum isopropanol production via native plasmid pCA replicon
ORGANISM(S): Clostridium Autoethanogenum (ncbitaxon:84023) 
2022-05-10 | MSV000089452 | MassIVE
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