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ProteomicsArabidopsis FTSH12 mutant terminomics
DEgradomic analysis of protein termini in Arabidopsis thaliana mutants expressing altered abundance of the chloroplast protease FTSH12.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-11-09 | PXD022423 | Pride
Arabidopsis thaliana Ftsh12 Chloroplast Metalloprotease Degradomics 
ProteomicsRepression of pattern-triggered immunity by the hypoxia response program
Seedlings of Arabidopsis wild type and ATE1/2 double knock-out mutants were treated with flagellin 22 peptide to elicit pathogen-triggered immunity (PTI) responses. Leaves were harvested and proteome composition assessed.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-07-25 | PXD046263 | Pride
Hypoxia Arabidopsis thaliana N-degron pathway Pti Plant immunity 
ProteomicsThe Paulinella chromatophore N-terminome
The cercozoan amoeba Paulinella chromatophora contains photosynthetic organelles - termed chromatophores - that evolved from a cyanobacterium ~100 million years ago, independently from plastids in plants and algae. Despite its more recent origin, at least one third of the chromatophore proteome cons...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2023-04-06 | PXD028527 | Pride
Protein import Chromatophore Paulinella chromatophore 
ProteomicsInteraction of Cystatin6 with Legumain-beta in Arabidopsis seeds
Co-IPs to confirm the domain-specific interaction of the Arabidopsis protease inhibitor Cystatin 6 with the cystein protease legumain-beta (aka vacuolar processing enzyme (VPE) beta)-
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2023-08-23 | PXD042261 | Pride
Arabidopsis Atvpebeta Protease Inhibitor Atcys6 Ap-ms Interaction Atlegbeta 
ProteomicsIdentification of proteins interacting with recombinant Arabidopsis Legumain-beta
Pull down assay with recombinant AtLEGbeta to identify interaction partners
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2023-08-23 | PXD042260 | Pride
Arabidopsis Arabidopsis cystatin-6 Legumain beta Interaction partner Vpebeta 
ProteomicsSystems-level Plant Responses Reveal Pseudomonas-Mediated Growth Promotion in Brachypodium Under Nitrogen Limitation
Investigation of the temporal-resolved morphological and biochemical responses of Brachypodium distachyon to inoculation with the beneficial microbe Pseudomonas koreensis Ps9-14 under different N levels. P. koreensis was tested for its ability to fix N via a 15N natural abundance approach.
ORGANISM(S): Brachypodium distachyon (Purple false brome) (Trachynia distachya) 
2026-05-18 | PXD050676 | Pride
ProteomicsFunctional Characterization of Target of Rapamycin (TOR) Signalling in Physcomitrella
Target of rapamycin (TOR) is a structurally and functionally conserved protein kinase and an important signalling hub in eukaryotes. The moss Physcomitrella (Physcomitrium patens) is a model organism for plant physiology, development, and evolution. However, little is known about TOR signalling in n...
ORGANISM(S): Physcomitrella Physcomitrella patens subsp. patens (Moss) 
2026-02-09 | PXD069889 | Pride
Physcomitrella Tor signalling 
ProteomicsAdaptation-dependent alterations in the human skeletal muscle proteome and phosphoproteome of human skeletal muscle in response to damaging resistance exercise
Resistance exercise (RE) enhances strength, muscle mass, and overall health. Intense RE also triggers rapid muscle damage that is efficiently restored through proteostatic mechanisms in healthy individuals. However, the specific factors and signalling processes active at sites of damage remain poorl...
ORGANISM(S): Homo sapiens (Human) 
2026-04-28 | PXD044976 | Pride
Resistance exercise Proteomics Adaptation Fractionation Human muscle Phosphoproteomics Deadaptation 
ProteomicsProcessing and release of the maize phytocytokine Zip1
Phytocytokines are endogenous peptides that modulate plant immunity outcomes, yet how their maturation and spatial deployment are controlled remains unclear. Here we show that the maize phytocytokine precursor PROZIP1 is controlled by a spatially separated, two-stage proteolytic pathway that mechani...
ORGANISM(S): Escherichia coli 
2026-08-04 | PXD075416 | Pride
Phytocytokine Metacaspase Zip1 Apoplastic immunity Plcps 
ProteomicsComparison of the skeletal muscle proteomes in wt and hBAG3P209L overexpressing mice
Myofibrillar myopathy-6 (MFM6) is rare, autosomal dominant neuromuscular disease that is characterised by devastating childhood muscular dystrophy, restrictive cardiomyopathy, and respiratory insufficiency. MFM-6 is caused by single base mutation in the gene encoding the co-chaperone BAG3 (Bcl-2 ass...
ORGANISM(S): Mus musculus (Mouse) 
2025-12-11 | PXD047942 | Pride
Myofibrillar myopathy-6  mouse model  proteome  skeletal muscle Bag3p209l Bag3 
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