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TranscriptomicsHigh temporal resolution profiling of U2OS fibroblasts
High-temporal resolution profiling was performed on U2OS fibroblasts to detect rhythmic transcripts Keywords: time course Samples were collected every hour for 48 hours from dexamethasone-synchronized U2OS cells. Cells synchronized with dexamethasone for 24 hours, and harvested from the 24th to 71...
ORGANISM(S): Homo sapiens 
2008-12-14 | E-GEOD-13949 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of forskolin-synchronized NIH3T3 cells to detect rhythmic transcripts
High-temporal resolution profiling was performed on NIH3T3 fibroblasts to detect rhythmic transcripts Experiment Overall Design: Samples were collected every hour for 48 hours from forskolin-synchronized NIH3T3 cells. Samples were analyzed using Affymetrix arrays.
ORGANISM(S): Mus musculus 
2008-10-26 | E-GEOD-11922 | biostudies-arrayexpress
ProteomicsA comprehensive evaluation of the Ewing sarcoma surface and global proteomes reveals actionable immunotherapeutic targets.
Ewing sarcoma (EwS) is the second most common bone sarcoma in children, with 1 case per 1.5 million in the United States. While the survival rate of patients diagnosed with localized disease is ~70%, this decreases to ~30% for patients with metastatic disease and only ~10% for treatment refractory d...
ORGANISM(S): Homo sapiens (Human) 
2023-09-29 | PXD043375 | Pride
Ewing sarcoma Surfaceome 
ProteomicsA co-opted ISG15-USP18 binding mechanism normally reserved for deISGylation controls type I IFN signalling
Type I interferon (IFN) signalling induces the expression of several hundred IFN-stimulated genes (ISGs) that provide an unfavourable environment for viral replication. To prevent an overexuberant response and autoinflammatory disease, IFN signalling requires tight control. One critical regulator is...
ORGANISM(S): Homo sapiens (Human) 
2025-03-07 | PXD051575 | Pride
Isgylation Isg15 Signalling Interferon 
ProteomicsMulti-omics profiling of non-small cell lung cancer patient-derived xenografts reveals proteome and phosphoproteome remodeling associated with patient outcome
131 patient-derived xenograft models were generated for non-small cell lung carcinoma and were profiled by analysis of gene copy number variation, whole exome sequence, methylome, transcriptome, proteome, and phospho(Tyr)-proteome. Proteome profiling resolved the known major histology subtypes and r...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2021-11-24 | PXD016579 | Pride
Nsclc Tmt Lung Pdx 
UnknownRemarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.
Not available
S-EPMC4512556 | biostudies-literature
TranscriptomicsPlatform comparison and transcription profiling of mixed tissue RNA samples formulated to contain different ratios of RNA for each of four rat tissues (brain, liver, kidney, and testes) on Affymetrix RAE230A, CodeLink UniSet Rat I, and Agilent G4130A rat oligonucleotide arrays
This experiment is a test of a reagent that can provide a basis for performance assessments on Affymetrix RAE230A, CodeLink UniSet Rat I, and Agilent G4130A rat oligonucleotide arrays. The reagent is a set of two mixed tissue RNA samples formulated to contain different ratios of RNA for each of f...
ORGANISM(S): Rattus norvegicus 
2010-03-30 | E-TABM-16 | biostudies-arrayexpress
GenomicsLandscape of protein SUMOylation on chromatin in hIPSCs (ChiPS4) by SUMO1 CHIP-seq
SUMO1 CHIP-seq experiment was performed in untreated hiPSC line - ChiPS4, to determine the exact locations of chromatin bound SUMO1 in these cells, thus providing information about the landscape of SUMOylation of protein targets on chromatin in human pluripotent cells and as such allowing for invest...
ORGANISM(S): Homo sapiens 
2022-12-01 | E-MTAB-9960 | biostudies-arrayexpress
ProteomicsCharacteristics of tendinopathy development in humans
Overuse injuries of tendon (tendinopathy) represents a significant musculoskeletal health problem, but its pathogenesis is only sparsely understood. We investigated the characteristics behind the development of tendinopathy in humans that had either early phase (1-2 months of symptoms, n=14) (ET) or...
ORGANISM(S): Homo sapiens (Human) 
2026-03-02 | PXD062414 | Pride
Ecm Clinical medicine Tendinopathy 
UnknownA multimodality test to guide the management of patients with a pancreatic cyst.
Not available
S-EPMC7859881 | biostudies-literature
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