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ProteomicsProteomic Analysis of Lyme Disease: Global Protein Comparison of Three Strains of Borrelia Burgdorferi
We report the proteomic analysis of the archetype B. burgdorferi B31 strain and two other strains (ND40, and JD-1) having different Borrelia pathotypes using strong cation exchange fractionation of proteolytic peptides followed by high-resolution, reversed phase capillary liquid chromatography coupl...
ORGANISM(S): Borreliella Burgdorferi (ncbitaxon:139) 
2020-05-29 | MSV000085503 | MassIVE
ProteomicsMouse brain proteome response to a circadian rhythm disruption and FABP7 KO
Proteomic data from mouse brain; frontal cortical/hippocampal, encompassing Sham control and Fabp7 KO combined with circadian rhythm disrupting electroshock. 16 total samples. Samples were digested with trypsin, TMT labeled and fractionated (12) then analyzed by LC-MS/MS. Data was searched with MS-G...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2025-02-21 | MSV000097187 | MassIVE
ProteomicsPhosphoproteomic Response of Cardiac Endothelial Cells to Ischemic Injury and Ultrasound
Global and phosphoproteomic data from mouse primary cardiac endothelial cells treated with oxygen deprivation and/or ultrasound. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline.
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2020-12-31 | MSV000086652 | MassIVE
ProteomicsCrystalline cellulose hydrolysis in microbial communities via actinobacterial glycoside hydrolase family 12
Proteomic data from supernatants from thermophilic cellulolytic microbial communities, for the identification of specific hydrolases from Thermobispora bispora related actinobacterium.
ORGANISM(S): environmental samples 
2016-08-25 | PXD004204 | Pride
Proteomics Metaproteome Hydrolases Actinobacterium 
ProteomicsThe Mycobacterium tuberculosis O-phosphorylation landscape
LC-MS/MS tryptic peptide data comprising both label free (phosphoproteome) and TMT10 (global and phosphoproteome) analysis of mycobacterium tuberculosis mutants (WT, GoF, and LoF) grown at stationary phase. Data was searched with MS-GF+ (TMT) and MaxQuant (label free).
ORGANISM(S): Mycobacterium Tuberculosis (ncbitaxon:1773) 
2021-10-21 | MSV000088254 | MassIVE
ProteomicsCoupling microdroplet-based sample preparation, multiplexed isobaric labeling, and nanoflow peptide fractionation for deep proteome profiling of tissue microenvironment
Existing spatially-resolved proteomics technologies cannot provide deep proteome coverage due to limited sensitivity and poor sample recovery. Herein, we seamlessly combined laser capture microdissection with a low-volume sample processing technology that includes a microfluidic device named microPO...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-01-25 | MSV000093925 | MassIVE
Proteomics,MultiomicsProteome analysis of human lymphotropic tumor viruses
Detection/identification of virola proteins from tumor cells
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-02-12 | MSV000079036 | MassIVE
ProteomicsProteomics of human peripheral blood mononuclear cells under normal circadian cycle and under a simulated night shift
Proteomic data from human peripheral blood mononuclear cells (PBMCs). Samples taken over a 24 hour constant light and diet following 3 days of normal day shift cycle or a night shift - circadian misaligned schedule where sleep and wake cycles were reversed. Time points (in clock time) 1, 7, 14, 21 h...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-10-05 | MSV000093054 | MassIVE
ProteomicsSynechocystis.sp. 6803 - Whole organism, SC (Wegener,mcp,2010)
abundance based on Spectral counting, Interaction consistency score: 6.1, Coverage: 38
ORGANISM(S): 1148 
2010-00-00 | 1305834575 | PAXDB
ProteomicsSurfactant-assisted one-pot sample preparation for label-free single-cell proteomics
Large numbers of cells are generally required for quantitative global proteome profiling due to the significant surface adsorption losses associated with sample processing. Such bulk measurement obscures important cell-to-cell variability (cell heterogeneity) and makes proteomic profiling impossible...
ORGANISM(S): Homo Sapiens 
2021-03-11 | PXD022827 | panorama
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